View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_30 (Length: 314)
Name: NF3640_high_30
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 38057172 - 38056881
Alignment:
| Q |
8 |
atattattctgcatatattcttgttaaacaccagaatctaaaacacgtactacacattgttttctctctcgttattgtgagaaatgggatgaaccaagat |
107 |
Q |
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| T |
38057172 |
atattattctgcatatattcttgttaaacaccagaatctaaaacacgtactacacattgttttctctctcgttattgtgagaaatgggatgaaccaagat |
38057073 |
T |
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| Q |
108 |
cagaaatatcataatgcatgtatgcatgattgaaataatatgaatgaatgaatgtcgtcgtcttcgtcttcttcacgttccaaatcaaatgctgctaatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38057072 |
cagaaatatcataatgcatgtatgcatgattgaaataatatgaatgaatgaatgtcgtcgtcttcgtcttcttcacgttccaaatcaaatgctgctaatt |
38056973 |
T |
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| Q |
208 |
ctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacactacaaacacctcgcctgacaatagtgtcaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056972 |
ctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacactacaaacacctcgcctgacaatagtgtcaag |
38056881 |
T |
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