View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_high_35 (Length: 287)

Name: NF3640_high_35
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_high_35
NF3640_high_35
[»] chr3 (1 HSPs)
chr3 (1-287)||(49545518-49545804)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 49545518 - 49545804
Alignment:
Q  1 ttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataaagagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49545518 ttcttgcccttgcacatcaactagtgaggaaaatgaagaaaataaagagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaat 49545617  T
Q  101 gtgctcatcaagctaactttatcagcattgcgtaccttggaagaaattcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49545618 gtgctcatcaagctaactttatcagcattgcgtaccttggaagaaattcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttga 49545717  T
Q  201 aaggtgatacaactggtacatgtatgagttttgctcatgtatgcggaatttttgcagaagcaaggggtaaaaactaaaacgtcaggt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49545718 aaggtgatacaactggtacatgtatgagttttgctcatgtatgcggaatttttgcagaagcaaggggtaaaaactaaaacgtcaggt 49545804  T

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