View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_39 (Length: 272)
Name: NF3640_high_39
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 1962619 - 1962868
Alignment:
| Q |
13 |
tcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggggttgctttagcccttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962619 |
tcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggggttgctttagcccttc |
1962718 |
T |
|
| Q |
113 |
aacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1962719 |
aacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaagggcaccctttgttgccttggtggttgatgcatt |
1962818 |
T |
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| Q |
213 |
agcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962819 |
agcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
1962868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 2015810 - 2015561
Alignment:
| Q |
13 |
tcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggggttgctttagcccttc |
112 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
2015810 |
tcaaaaacaatccttcaaactcttccatcaaacatcagctgtacttttcttccaccagtgaactccaatgacctaccacaagggattgctttagtacttc |
2015711 |
T |
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| Q |
113 |
aacttcagctcacactaactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcatt |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
2015710 |
aacttcagctcacactgactcactcactgccatctatacatcaggccttgaagtccttaactttaaagacaccctttgttgccttggtggttgatatatc |
2015611 |
T |
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| Q |
213 |
agcaattgatgcactagattttgctaaggaattcaacttgttgtcctatg |
262 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2015610 |
agcaatggatgcactggattttgctaaggaattcaacttgttgtcctatg |
2015561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 2019177 - 2018944
Alignment:
| Q |
29 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggggttgctttagcccttcaacttcagctcacact |
128 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||| ||| || ||| ||||||||||| ||||||||| |||||| ||||||||||| | |
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| T |
2019177 |
aaactcttccatcaaacatcaactgtacttttcttccatcagtgagctccaaagacttaccacaagggattgctttagtacttcaaattcagctcacagt |
2019078 |
T |
|
| Q |
129 |
aactcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcacta |
228 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
2019077 |
aattcactcactgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgattcattagcaatcgatgcacta |
2018978 |
T |
|
| Q |
229 |
gattttgctaaggaattcaacttgttgtcctatg |
262 |
Q |
| |
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||||||||||| || |||||| |||||||||||| |
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| T |
2018977 |
gattttgctaaagagttcaacatgttgtcctatg |
2018944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 2005400 - 2005333
Alignment:
| Q |
29 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggg |
96 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
2005400 |
aaactcttccatcaaacatcaaccatacttttcttccacctgtgaaccctaatgacctaccacaaggg |
2005333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 2008780 - 2008713
Alignment:
| Q |
29 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggg |
96 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||||| | |||||||||||||||||| |
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| T |
2008780 |
aaactcttccatcaaacatcaaccacacttttcttccacctgtgaaccccaatgacctaccacaaggg |
2008713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 2012251 - 2012163
Alignment:
| Q |
173 |
ctttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgctaaggaattcaacttgttgtcctat |
261 |
Q |
| |
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||||||||| ||| |||| ||||||||||||||||| || || |||| |||||| | |||||||| ||||||||| ||||||||||| |
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| T |
2012251 |
ctttaaggattccccttgtggccttggtggttgatgcttttgctgttgaagcactaaactttgctaaagaattcaacatgttgtcctat |
2012163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 1968235 - 1968302
Alignment:
| Q |
29 |
aaactcttccatcaaacatcagctgtacttttcttccaccagtgaactctaatgacctaccacaaggg |
96 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| ||||| | |||||||||||||||||| |
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| T |
1968235 |
aaactcttccatcaaacatcaaccacacttttcttccacctgtgaatcccaatgacctaccacaaggg |
1968302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 5901924 - 5902047
Alignment:
| Q |
139 |
ctgccatctatacatcaggccttgaagtccttaactttaaggacaccctttgttgccttggtggttgatgcattagcaattgatgcactagattttgcta |
238 |
Q |
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||||||| | |||||||||| ||||| ||||||||||||||||| ||| ||| || ||||||||||| | ||| | || ||||||||||| |||| |
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| T |
5901924 |
ctgccatatttacatcaggcattgaactccttaactttaaggactccccctgtggcactggtggttgattctttatctgccgaagcactagatttggcta |
5902023 |
T |
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| Q |
239 |
aggaattcaacttgttgtcctatg |
262 |
Q |
| |
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|||| |||||| |||||||||||| |
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| T |
5902024 |
aggagttcaacatgttgtcctatg |
5902047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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