View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_42 (Length: 267)
Name: NF3640_high_42
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 44247510 - 44247254
Alignment:
| Q |
6 |
ttgaccaacctcaatatttagnnnnnnnaaaccttatccaattaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcat |
105 |
Q |
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| T |
44247510 |
ttgaccaacctcaatatttagtttttttaaaccttatccaattaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcat |
44247411 |
T |
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| Q |
106 |
atcggagaggnnnnnnnntttagagttaagaatgtggacatatccaattaaaacttagagnnnnnnnattcatcactggacatatcctccattgtttatt |
205 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
44247410 |
atcggagaggaaaaaaaatttagagttaagaatgtggacatatccaattaaaatttagagtttttttattcatcactggacatatcctccattgtttatt |
44247311 |
T |
|
| Q |
206 |
tttactatatattaattacaatttagtgttaagaatgttttttaaccctttgcttct |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44247310 |
tttactatatattaattacaatttagtgttaagaatgttttttaaccctttggttct |
44247254 |
T |
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