View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_high_51 (Length: 245)

Name: NF3640_high_51
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_high_51
NF3640_high_51
[»] chr1 (6 HSPs)
chr1 (18-235)||(47774925-47775139)
chr1 (129-238)||(47771032-47771141)
chr1 (140-191)||(47711554-47711605)
chr1 (140-188)||(47716305-47716353)
chr1 (140-237)||(6525341-6525438)
chr1 (140-188)||(47744069-47744117)
[»] chr5 (3 HSPs)
chr5 (131-237)||(27368590-27368696)
chr5 (140-186)||(28828947-28828993)
chr5 (140-186)||(28859966-28860012)
[»] chr8 (1 HSPs)
chr8 (140-188)||(11224911-11224959)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 47775139 - 47774925
Alignment:
Q  18 aaaacatcaaactatttgaataaattgttgaacattgactactaagtaacaaagtgaaattattatcttgctaatggttgattcgaattaacatcagtta 117  Q
    |||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47775139 aaaacatcaaaccatttgaataaattgttgaacattgacta---agtaacaaagtgaaattattatcttgcttatggttgattcgaattaacatcagtta 47775043  T
Q  118 ataagctcatacatatttggaaacttactaggttccaacaattttacttgtatttccttgagtttgatcgataacaaacaatctcgccaatccaaaatcg 217  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47775042 gtaagctcatacatatttagaaacttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcg 47774943  T
Q  218 gatatcttgggattcatc 235  Q
    ||||| || |||||||||    
T  47774942 gatattttaggattcatc 47774925  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 47771141 - 47771032
Alignment:
Q  129 catatttggaaacttactaggttccaacaattttacttgtatttccttgagtttgatcgataacaaacaatctcgccaatccaaaatcggatatcttggg 228  Q
    ||||||| ||||||||||| ||||||||||||| |  ||||||||||| || |||||| |||||||||||||| |||||||||||||| |||||||| ||    
T  47771141 catattttgaaacttactaagttccaacaatttgatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagatatcttagg 47771042  T
Q  229 attcatctca 238  Q
    ||||||||||    
T  47771041 attcatctca 47771032  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 47711554 - 47711605
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatcgataa 191  Q
    |||||||| |||||||| |||||| |||||||| ||||||||||||||||||    
T  47711554 acttactatgttccaacgattttatttgtatttacttgagtttgatcgataa 47711605  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 47716305 - 47716353
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatcga 188  Q
    |||||||| |||||||| |||||| |||||||| |||||||||||||||    
T  47716305 acttactatgttccaacgattttatttgtatttacttgagtttgatcga 47716353  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 6525438 - 6525341
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatcgataacaaacaatctcgccaatccaaaatcggatatcttgggattcatctc 237  Q
    |||||||||||||| |||||| |  |||||||| | |||||||| || | | |||||| ||| ||||  |||||||| | |||||| |||||||||||    
T  6525438 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 6525341  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 47744069 - 47744117
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatcga 188  Q
    |||||||| |||||||| |||||| |||||||  |||||||||||||||    
T  47744069 acttactatgttccaacgattttatttgtattaacttgagtttgatcga 47744117  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 27368590 - 27368696
Alignment:
Q  131 tatttggaaacttactaggttccaacaattttacttgtatttccttgagtttgatcgataacaaacaatctcgccaatccaaaatcggatatcttgggat 230  Q
    ||||| |||||||||||||||||||| ||| || ||||| |||||| ||||||| ||||||||||   ||| ||||||||||||||||||||||| ||||    
T  27368590 tattttgaaacttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggat 27368689  T
Q  231 tcatctc 237  Q
    |||||||    
T  27368690 tcatctc 27368696  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 28828947 - 28828993
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatc 186  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  28828947 acttactaggttccaacaattctacttgtatttgcttgtgtttgatc 28828993  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 28859966 - 28860012
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatc 186  Q
    ||||||||||||||||||| | ||||||||||| |||| ||||||||    
T  28859966 acttactaggttccaacaactctacttgtatttgcttgggtttgatc 28860012  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 11224959 - 11224911
Alignment:
Q  140 acttactaggttccaacaattttacttgtatttccttgagtttgatcga 188  Q
    |||||||| |||||||| |||||| |||||||  |||||||||||||||    
T  11224959 acttactatgttccaacgattttatttgtattaacttgagtttgatcga 11224911  T

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