View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_55 (Length: 239)
Name: NF3640_high_55
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33601369 - 33601598
Alignment:
| Q |
1 |
ctccctatttcaccaccacctctatgatccatcccacatcaatataaataaataaagtatttgacccaccaataattataatttcttttgtcnnnnnnnn |
100 |
Q |
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| T |
33601369 |
ctccctatttcaccaccacctctatgatccatcccacatcaatataaataaataaagtatttgacccaccaataattataatttcttttgt----aaaaa |
33601464 |
T |
|
| Q |
101 |
nnnnnnnnnnntactataattataatttcttaaatagtaatttaacttactcttgtaatttaacaatgtgcattttttaaggatggaaaattataagatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601465 |
aaaaagaaaaatactataattataatttcttaaatagtaatttaacttactcttgtaatttaacaatgtgcattttttaaggatggaaaattataagatc |
33601564 |
T |
|
| Q |
201 |
agactagccgattatgttaaaatttcttatcact |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
33601565 |
agactagccgattatgttaaaatttcttatcact |
33601598 |
T |
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