View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_56 (Length: 238)
Name: NF3640_high_56
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_56 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 10239140 - 10238919
Alignment:
| Q |
17 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
116 |
Q |
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| T |
10239140 |
aaaatacgctttgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttccccggtaaggtccgatccatcgaaagttccaagg |
10239041 |
T |
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| Q |
117 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
216 |
Q |
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| T |
10239040 |
atcggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
10238941 |
T |
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| Q |
217 |
aagatgggaaaacagtgacaat |
238 |
Q |
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| T |
10238940 |
aagatgggaaaacagtgacaat |
10238919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 10230360 - 10230141
Alignment:
| Q |
17 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
116 |
Q |
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| T |
10230360 |
aaaatatgctgtgttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaagg |
10230261 |
T |
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| Q |
117 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
216 |
Q |
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| T |
10230260 |
atcggaattctacctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgagg |
10230161 |
T |
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| Q |
217 |
aagatgggaaaacagtgaca |
236 |
Q |
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| T |
10230160 |
aagatgggggaacagtgaca |
10230141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 10255465 - 10255670
Alignment:
| Q |
17 |
aaaatacgctgtgttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttcccccgtaaggtcggatccatcgaaggttccaagg |
116 |
Q |
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| T |
10255465 |
aaaatacgctgtgtttacggatattcagcttggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaagg |
10255564 |
T |
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| Q |
117 |
attggaattctacctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgagg |
216 |
Q |
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| T |
10255565 |
atcggaattctaccgagatatgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaactcatgggatgggg |
10255664 |
T |
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| Q |
217 |
aagatg |
222 |
Q |
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|||||| |
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| T |
10255665 |
aagatg |
10255670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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