View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_58 (Length: 236)
Name: NF3640_high_58
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8437487 - 8437716
Alignment:
| Q |
1 |
aagtgtgtggagggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataaggatatat |
100 |
Q |
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| T |
8437487 |
aagtgtgtggagggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctcaaggaaatatattgccagtaaacaaaaaagataaggatatat |
8437586 |
T |
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| Q |
101 |
ctttcgaaaaatgaaatcagtgagacaaatccttaac--nnnnnnnnnnnnnnnnnngtttatgatcaatacaaacatgaacaagcaattgatttga--- |
195 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
8437587 |
ctttcgaaaaatgaaatcagtgagacaaatccttaactatatatctcacaaaaatatgtttatgatcaatacacacatgaacaagcaattgatttgattt |
8437686 |
T |
|
| Q |
196 |
---tttaataagtaacacgaactccttggt |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8437687 |
gattttaataagtaacacgaactccttggt |
8437716 |
T |
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