View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_high_61 (Length: 227)

Name: NF3640_high_61
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_high_61
NF3640_high_61
[»] chr4 (4 HSPs)
chr4 (6-227)||(46449818-46450039)
chr4 (40-178)||(8569176-8569314)
chr4 (40-178)||(5892428-5892566)
chr4 (51-155)||(36396076-36396186)
[»] scaffold0256 (1 HSPs)
scaffold0256 (40-175)||(15114-15250)
[»] chr5 (2 HSPs)
chr5 (52-179)||(39897155-39897282)
chr5 (40-112)||(25725684-25725756)
[»] chr8 (8 HSPs)
chr8 (40-180)||(5478798-5478940)
chr8 (40-171)||(17602720-17602851)
chr8 (87-178)||(9784723-9784814)
chr8 (40-117)||(17607464-17607541)
chr8 (87-156)||(9786741-9786810)
chr8 (91-181)||(19152189-19152279)
chr8 (52-106)||(9786811-9786865)
chr8 (138-171)||(17607431-17607464)
[»] scaffold0012 (1 HSPs)
scaffold0012 (40-178)||(165537-165676)
[»] chr2 (1 HSPs)
chr2 (87-179)||(21712802-21712894)
[»] chr1 (7 HSPs)
chr1 (87-178)||(49116381-49116472)
chr1 (87-178)||(49120974-49121065)
chr1 (87-178)||(26623053-26623144)
chr1 (87-178)||(26627648-26627739)
chr1 (85-178)||(27958382-27958476)
chr1 (67-154)||(9834587-9834674)
chr1 (125-179)||(35235594-35235648)
[»] chr7 (5 HSPs)
chr7 (87-178)||(35933898-35933989)
chr7 (87-178)||(35938499-35938590)
chr7 (90-178)||(25453806-25453894)
chr7 (52-108)||(25470804-25470860)
chr7 (52-106)||(25453922-25453976)
[»] chr6 (3 HSPs)
chr6 (42-122)||(5239347-5239427)
chr6 (52-106)||(26890461-26890515)
chr6 (125-178)||(26890513-26890565)
[»] chr3 (2 HSPs)
chr3 (52-106)||(22419296-22419350)
chr3 (40-94)||(10863188-10863242)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 46450039 - 46449818
Alignment:
Q  6 acataaaccttacatagttacaaacgcatatcgaagaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450039 acataaaccttacatagttacaaacgcatatcgaagaaataaggacataaaccagaaattgatttgtttccattatatgtaattatttagtgtaattata 46449940  T
Q  106 tggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaaattaaaataatgaaaagaaagggtc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46449939 tggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaaattaaaataatgaaaagaaagggtc 46449840  T
Q  206 acaagttcaaacacgtaacaaa 227  Q
    ||||||||||||||||||||||    
T  46449839 acaagttcaaacacgtaacaaa 46449818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 8569314 - 8569176
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaagg 139  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  8569314 agaaataaggacataaatcaaaaattgatttgtttccattatatgtaattatgtagtgtaattatatgtatagccttgtaacctctatatatacacaagg 8569215  T
Q  140 aataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8569214 aataacaatgagaaaggcatcaagccattatttgtgaca 8569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 5892428 - 5892566
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaagg 139  Q
    ||||||||||||| ||||||||||||||||||||  | |||  | |||||| ||| |||||| |  || |||||||| |||  ||||||||||||||||     
T  5892428 agaaataaggacacaaatcagaaattgatttgttctcgttaattataattacttactgtaatcacctgtatagccttataaaatctatatatacacaaga 5892527  T
Q  140 aataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||| ||||| ||||||||| |||| ||||||    
T  5892528 aataacaatgaaaaaggtatcaagccaatattcgtgaca 5892566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 36396186 - 36396076
Alignment:
Q  51 cataaatcagaaattgatttgtttccattatatgtaattatttagtgtaatta-------tatggatagccttgtaacctctatatatacacaaggaata 143  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||       | || ||||||||||||||||| |||||| ||||| ||||    
T  36396186 cataaatcagaaattgatt-gtttccattatttgtaattatttactgtaactacctgtaatctgtatagccttgtaacctctgtatataaacaagaaata 36396088  T
Q  144 acaatgagaaag 155  Q
    ||||||||||||    
T  36396087 acaatgagaaag 36396076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 15250 - 15114
Alignment:
Q  40 agaaataagg-acataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaag 138  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15250 agaaataagggacataaattagaaattgatttgtttccattatatgtaattatttagtgtaattatatgtatagccttgtaacctctatatatacacaag 15151  T
Q  139 gaataacaatgagaaaggcatcaagccattatttgtg 175  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  15150 gaataacaatgagaaaggtatcaagccattatctgtg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 39897282 - 39897155
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgag 151  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39897282 ataaatcagaaattgatttgtttccaataattgtaattatttagtgtaattatatgtatagccttgtaacctctatatatacacaaggaataacaatgag 39897183  T
Q  152 aaaggcatcaagccattatttgtgacaa 179  Q
    ||||||||||||||||||||||||||||    
T  39897182 aaaggcatcaagccattatttgtgacaa 39897155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 25725756 - 25725684
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatag 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25725756 agaaataaagacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatgtatag 25725684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 5478940 - 5478798
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattata---tgtaattatttagtgtaattatatggatagccttgtaacctctatatatacaca 136  Q
    |||||||||||||||||| |||||||||||| |||||||||||   ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  5478940 agaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatgtatagccctgtaac-tctatatatacaca 5478842  T
Q  137 aggaataacaatgagaaaggcatcaagccattatttgtgacaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5478841 aggaataacaatgagaaaggcatcaagccattatttgtgacaaa 5478798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 17602851 - 17602720
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaagg 139  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |    
T  17602851 agaaataaggacctaaatcagaaattgatttgtttccaatataagtaattatttagtgtaattatatggatagccttgtaacctctttatatacataaag 17602752  T
Q  140 aataacaatgagaaaggcatcaagccattatt 171  Q
    ||||||||||||||||||||||||||| ||||    
T  17602751 aataacaatgagaaaggcatcaagccaatatt 17602720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 9784814 - 9784723
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9784814 attatttagtgtaattatatgtatagcctcgtaacctctatatatacataaggaataacaaggagaaaggcatcaagccattatttgtgaca 9784723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 17607541 - 17607464
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttg 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  17607541 agaaataaggacataaatcagaaattgatttgtttccaatatatgtaattatttagtgtaattatatgaatagccttg 17607464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 9786810 - 9786741
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaagg 156  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  9786810 attatttagtgtaattatatgtatagccttgtaatctctatatatacataaggaataacaaggagaaagg 9786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 19152279 - 19152189
Alignment:
Q  91 tttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaaa 181  Q
    |||| ||||||||  || ||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||  | |||||||||||||||    
T  19152279 tttactgtaattacttgtatagccttgtaacctttatatatacacaaggaataacaacgagaaaaacatcaaatcgttatttgtgacaaaa 19152189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 9786865 - 9786811
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatat 106  Q
    |||||||||||||||||||||||||| ||  | ||||||||||| ||||||||||    
T  9786865 ataaatcagaaattgatttgtttccaataattataattatttagggtaattatat 9786811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 17607464 - 17607431
Alignment:
Q  138 ggaataacaatgagaaaggcatcaagccattatt 171  Q
    ||||||||||||||||||||||||||||| ||||    
T  17607464 ggaataacaatgagaaaggcatcaagccaatatt 17607431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 165537 - 165676
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatat--gtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaa 137  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||    
T  165537 agaaataaggacataaatcagaaattgatttgtttccaatatatatgtaattatttagtgtaattat-tgtatagccttgtatcctctttatatacagaa 165635  T
Q  138 ggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
     ||||||||||||||||||||||||| || |||| ||||||    
T  165636 agaataacaatgagaaaggcatcaagtcaatattcgtgaca 165676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 21712802 - 21712894
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaa 179  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21712802 attatttagtgtaattatatgtataggcttgtaacccctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaa 21712894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 49116381 - 49116472
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  49116381 attatttagtgtaattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatttgtgaca 49116472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 49120974 - 49121065
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  49120974 attatttagtgtaattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatttgtgaca 49121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 26623144 - 26623053
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  26623144 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 26623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 26627739 - 26627648
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  26627739 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 26627648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 27958382 - 27958476
Alignment:
Q  85 taattatttagtgtaatta-tatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatc-aagccattatttgtgaca 178  Q
    |||||||||| |||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  27958382 taattatttactgtaattactttgtatagccttgtaac-tctatatatacacaaggaataacaatgagaaaggcatcaaagccaatatttctgaca 27958476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 9834587 - 9834674
Alignment:
Q  67 atttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaa 154  Q
    |||||||  ||||| ||||||||||||| |||| |||  |  ||| ||||||||||| |||||||| |||||||||||||||||||||    
T  9834587 atttgttctcattaaatgtaattatttattgtagttacttatataaccttgtaacctatatatatatacaaggaataacaatgagaaa 9834674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 35235648 - 35235594
Alignment:
Q  125 tatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaa 179  Q
    |||||||| | |||||||||||||||||||| ||||||  |||||||||||||||    
T  35235648 tatatatatataaggaataacaatgagaaagacatcaaagcattatttgtgacaa 35235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 35933989 - 35933898
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  35933989 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 35933898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 35938590 - 35938499
Alignment:
Q  87 attatttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  35938590 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 35938499  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 25453894 - 25453806
Alignment:
Q  90 atttagtgtaattatatggatagccttgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    ||||||||||||||||   |||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||    
T  25453894 atttagtgtaattatagatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcattaagccattatttgtgaca 25453806  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 25470860 - 25470804
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatgg 108  Q
    |||||||||||||||||||||||||| ||  |||||||||||||| |||||||||||    
T  25470860 ataaatcagaaattgatttgtttccaataattgtaattatttagtataattatatgg 25470804  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 25453976 - 25453922
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatat 106  Q
    |||||||||||||||||||||||||| ||  |||||||||||||| |||||||||    
T  25453976 ataaatcagaaattgatttgtttccaataattgtaattatttagtataattatat 25453922  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 5239347 - 5239427
Alignment:
Q  42 aaataaggacataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatatggatagccttgtaacc 122  Q
    ||||||||||| |||||| |||||| ||||||  ||||| |||||||||||||||||||| |  || ||||||||||||||    
T  5239347 aaataaggacacaaatcaaaaattggtttgttctcattaaatgtaattatttagtgtaataaactgtatagccttgtaacc 5239427  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 26890461 - 26890515
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatat 106  Q
    |||||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  26890461 ataaatcagaaattgatttgtttctaataattgtaattatttagtgtaattatat 26890515  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 26890513 - 26890565
Alignment:
Q  125 tatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 178  Q
    |||||||||||||||||||||||||| ||| | |||||||| | ||||||||||    
T  26890513 tatatatacacaaggaataacaatga-aaaagtatcaagccgtaatttgtgaca 26890565  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 22419350 - 22419296
Alignment:
Q  52 ataaatcagaaattgatttgtttccattatatgtaattatttagtgtaattatat 106  Q
    |||||||||||||||||||||||||| ||  |||||||||||||| |||||||||    
T  22419350 ataaatcagaaattgatttgtttccaataattgtaattatttagtataattatat 22419296  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 10863188 - 10863242
Alignment:
Q  40 agaaataaggacataaatcagaaattgatttgtttccattatatgtaattattta 94  Q
    ||||||||||||| |||||| |||||||||||||  ||||| |||||||||||||    
T  10863188 agaaataaggacacaaatcataaattgatttgttctcattaaatgtaattattta 10863242  T

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