View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_high_7 (Length: 518)

Name: NF3640_high_7
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_high_7
NF3640_high_7
[»] chr3 (29 HSPs)
chr3 (15-241)||(23401579-23401806)
chr3 (52-265)||(23469075-23469289)
chr3 (262-443)||(23469314-23469495)
chr3 (52-265)||(23454609-23454823)
chr3 (321-443)||(23401804-23401926)
chr3 (52-265)||(23352491-23352705)
chr3 (52-265)||(23479133-23479347)
chr3 (52-265)||(23440465-23440679)
chr3 (52-265)||(23447844-23448058)
chr3 (52-265)||(23472994-23473208)
chr3 (52-265)||(23499612-23499826)
chr3 (57-265)||(23463836-23464045)
chr3 (52-265)||(23405200-23405414)
chr3 (58-265)||(23386832-23387040)
chr3 (51-232)||(23398488-23398670)
chr3 (270-358)||(23440711-23440799)
chr3 (55-265)||(35768708-35768919)
chr3 (270-356)||(23448090-23448176)
chr3 (270-356)||(23473240-23473326)
chr3 (270-422)||(23387072-23387222)
chr3 (270-422)||(23499858-23500008)
chr3 (268-355)||(23352735-23352822)
chr3 (270-422)||(23479379-23479529)
chr3 (270-355)||(23454855-23454940)
chr3 (270-355)||(23405446-23405531)
chr3 (52-171)||(36003087-36003206)
chr3 (270-352)||(23464077-23464159)
chr3 (465-496)||(23401948-23401979)
chr3 (465-496)||(23469521-23469552)
[»] scaffold0201 (2 HSPs)
scaffold0201 (52-266)||(11995-12210)
scaffold0201 (268-425)||(12239-12394)
[»] chr4 (1 HSPs)
chr4 (60-201)||(12896270-12896412)
[»] chr2 (2 HSPs)
chr2 (60-163)||(16122319-16122422)
chr2 (60-163)||(16336778-16336881)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 23401579 - 23401806
Alignment:
Q  15 catcaagtaagagtttccagagagattttgaatgaaattttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacct 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||  |||||    
T  23401579 catcaagtaagagtttccagagggattttgaatgaaattttggagctttttcaattcatttttgcatgcttcctagctccttgaactcggattttcacct 23401678  T
Q  115 aaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  23401679 aaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatcttcatatccagttttaggatgtttttctcagaagatagtca 23401778  T
Q  214 aactcaatagatgaagagaatcatgttt 241  Q
    ||||||||||||||||||||||||||||    
T  23401779 aactcaatagatgaagagaatcatgttt 23401806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23469075 - 23469289
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  23469075 ttttggagcattttcaattcattgtcccatgcttccttgcttcttgaactcggatttgcacctaaaacttttatagccagaggattgcctttgcaatagg 23469174  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||    
T  23469175 caattacactctctgatagatcttcatatccaattttaggatgtttttctccgaagatagtcaaactcaatagttgaagagaatcatgtttgttcaattc 23469274  T
Q  251 cttaacctcatatat 265  Q
    |||||||||| ||||    
T  23469275 cttaacctcacatat 23469289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 262 - 443
Target Start/End: Original strand, 23469314 - 23469495
Alignment:
Q  262 atatgagtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctaca 361  Q
    ||||| |||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  23469314 atatgtgtttatatctagttgtaataatgaccccactacccggtgccagtccatcaatttttagcataagatcttctatttgctctacagtttctctaca 23469413  T
Q  362 ctatccagcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttctacgtgcaataattctcactctg 443  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23469414 ctatccagcacaatgtaaaattctttacgtgcaatccttctcacagagaaaggggtttctacgtgcaataattctcactctg 23469495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23454609 - 23454823
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||||||||||||||||||||||||| ||| | || |||| |||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  23454609 ttttggagctttttcaattcattttcccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcctttgcaatagg 23454708  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||| |||| ||||||||| || ||||| ||    
T  23454709 caattacactctctgatagatcttcatatccaattttaggatgtttttccttgaagacagtcaaactgaatagctgaaaagaatcatgattattcaattc 23454808  T
Q  251 cttaacctcatatat 265  Q
    ||||||||| |||||    
T  23454809 cttaacctcgtatat 23454823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 321 - 443
Target Start/End: Original strand, 23401804 - 23401926
Alignment:
Q  321 tttagcataagatcttctatttgttctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttc 420  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23401804 tttagcataagatcttttatttgctctaaggtttctctacactatccagcacaatgaaagattctttacgtgcaatccttctcacagacaaaggggtttc 23401903  T
Q  421 tacgtgcaataattctcactctg 443  Q
    |||||||||||||||||||||||    
T  23401904 tacgtgcaataattctcactctg 23401926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23352491 - 23352705
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    ||||| |||||||||||||||||||  ||| |||  || | |||||||||| |||| |||||||||||||||| ||||||  ||||||||| ||||||||    
T  23352491 ttttgtagctttttcaattcatttttccattcttttttccctcttgaactcagattagcacctaaaacttttaaagccagcggattgccttggcaatagg 23352590  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    ||||||||| |||||||||||| ||||||||| | |||||||| ||||||| |||| ||| |||||  ||||| |||||||||||| |||||||||| ||    
T  23352591 caattacacgttctgatagatcttcatatccaatattaggatgcttttctctgaaggcagacaaacagaatagctgaagagaatcacgtttgttcaattc 23352690  T
Q  251 cttaacctcatatat 265  Q
    |||||||||||||||    
T  23352691 cttaacctcatatat 23352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23479133 - 23479347
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||||||||||||||||||||||||| || ||||| | ||  ||||||||  |||| ||||||||||||||||  |||||| | || |||||||||||||    
T  23479133 ttttggagctttttcaattcattttcccacgcttcttggccccttgaactgagatttgcacctaaaacttttaatgccagagggttacctttgcaatagg 23479232  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||  |||| |||||||||| ||||| |||| ||||||||| |||||||| ||    
T  23479233 caattacactttctgatagatcttcatatccaattttaggttgtttttctttgaaggcagtcaaactgaatagctgaaaagaatcatgcttgttcaattc 23479332  T
Q  251 cttaacctcatatat 265  Q
     |||| |||||||||    
T  23479333 tttaagctcatatat 23479347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23440465 - 23440679
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23440465 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagattttcccctaaaacttttaaagccagaggattgcctttgcaatagg 23440564  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||||||||||||||| ||| ||||| ||||||  |||||||||| |||| || ||||||| | ||| |||||||||||||| |||||||| ||    
T  23440565 caattacactttctgatagatcttcacatccaattttagactgtttttctccgaaggcattcaaactgagtagctgaagagaatcatggttgttcaattc 23440664  T
Q  251 cttaacctcatatat 265  Q
    ||| |||||||||||    
T  23440665 cttgacctcatatat 23440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23447844 - 23448058
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23447844 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23447943  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||  |||| || ||||||| ||||| |||||||||||| | || |  || ||    
T  23447944 caattacactatctgatagatcttcatatccagttttaggatgtttttctttgaaggcaatcaaactgaatagctgaagagaatcaggcttctctaattc 23448043  T
Q  251 cttaacctcatatat 265  Q
    |||||||||||||||    
T  23448044 cttaacctcatatat 23448058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23472994 - 23473208
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||| ||||||||||||||||||||| ||||| || |||| |||||| |   ||||  | ||||||||||||| ||||||| ||||||||||||||||||    
T  23472994 ttttcgagctttttcaattcattttcccatgcctctttgcctcttgagcggagatttacccctaaaacttttaaagccagaggattgcctttgcaatagg 23473093  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||| || ||||||| ||||| |||||||||||||| |||||||| |     
T  23473094 caattacactttctgatagatcttcatatccaattttaggctgttttcctccgaaggcattcaaactgaatagctgaagagaatcatgattgttcaatta 23473193  T
Q  251 cttaacctcatatat 265  Q
    | | |||||||||||    
T  23473194 catgacctcatatat 23473208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23499612 - 23499826
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||||||||||||||| ||||||||| ||||||||   ||  ||||||||  |||| |||||||||||||||| ||||||| | || |||||||||||||    
T  23499612 ttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaatagg 23499711  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||  |||| |||||||||| ||||| |||||||||||| | || |  || ||    
T  23499712 caattacactatctgatacatcttcatatccagttttaggatgtttttctttgaaggcagtcaaactgaatagctgaagagaatcaggcttctctaattc 23499811  T
Q  251 cttaacctcatatat 265  Q
    |||||||||||||||    
T  23499812 cttaacctcatatat 23499826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 57 - 265
Target Start/End: Original strand, 23463836 - 23464045
Alignment:
Q  57 gagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatt 156  Q
    ||||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| ||||||||||||||    
T  23463836 gagctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatt 23463935  T
Q  157 acactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaa 255  Q
    |||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| || ||||    
T  23463936 acactttccgatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattcattaa 23464035  T
Q  256 cctcatatat 265  Q
     |||||||||    
T  23464036 actcatatat 23464045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 52 - 265
Target Start/End: Original strand, 23405200 - 23405414
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||| ||||||||||||||||| ||| ||| ||   |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||    
T  23405200 ttttcgagctttttcaattcatcttcccatactattttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaatagg 23405299  T
Q  152 caattacactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||||| |||| ||  |||||| ||||| ||||||||||||||||||||||| ||    
T  23405300 caattacactttcagatagatcttcatatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattc 23405399  T
Q  251 cttaacctcatatat 265  Q
     |||| |||||||||    
T  23405400 attaaactcatatat 23405414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 58 - 265
Target Start/End: Original strand, 23386832 - 23387040
Alignment:
Q  58 agctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaatta 157  Q
    |||||||||||||||| ||| ||| |||  |||| ||||||||   ||||   |||||||||||||| ||||| | | |||||| |||||||||||||||    
T  23386832 agctttttcaattcatcttcccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaatta 23386931  T
Q  158 cactttctgatagatct-catatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatccttaac 256  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||||| ||    
T  23386932 cactttctgatatatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattccttgac 23387031  T
Q  257 ctcatatat 265  Q
     ||||||||    
T  23387032 ttcatatat 23387040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 23398488 - 23398670
Alignment:
Q  51 attttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatag 150  Q
    |||||||||||||| |||||| ||||| |||| ||| ||||  |||||||| ||||| ||| |||||||||||| ||||||| | || | ||| ||||||    
T  23398488 attttggagcttttccaattctttttcccatgtttctttgccccttgaacttggatttgcagctaaaacttttaaagccagagggtttcatttacaatag 23398587  T
Q  151 gcaattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagaga 232  Q
    ||||||| ||||| ||||||||| | ||||||| |||||||||||||||||| ||||  ||  ||||| ||||| ||||||||    
T  23398588 gcaattagactttgtgatagatctttatatccaattttaggatgtttttctctgaaggaaggaaaactgaatagctgaagaga 23398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 23440711 - 23440799
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctct 358  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23440711 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttctct 23440799  T

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Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 35768919 - 35768708
Alignment:
Q  55 tggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaa 154  Q
    ||||| |||| |||||||||||  |||||||| || ||||||||||   ||   ||||| |||||||||| ||||| | |||||||||||||||||||||    
T  35768919 tggagtttttccaattcatttttccatgcttctttacttcttgaacgaagacgtgcacccaaaacttttaaagccaaaggattgcctttgcaataggcaa 35768820  T
Q  155 ttacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatcctt 253  Q
    | ||||||||||| || || ||||||||| |||||||||| ||||||  ||| ||||||||||  || || |||||||| |  || || ||||| |||||    
T  35768819 taacactttctgagagctcttcatatccacttttaggatgcttttctttgaatacagtcaaacagaaaagctgaagagagttgtgcttattcaattcctt 35768720  T
Q  254 aacctcatatat 265  Q
     ||||| |||||    
T  35768719 gacctcgtatat 35768708  T

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Target: chr3; HSP #18
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 23448090 - 23448176
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 356  Q
    |||||||| |||||||||||||||||||||||  || | || |||||||||||||| ||||||||||||||||||||||||||||||    
T  23448090 ttatctctagttgtaataatgaccctactacctggtcctagaccatcaatttttaggataagatcttctatttgttctaaggtttct 23448176  T

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Target: chr3; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 23473240 - 23473326
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttct 356  Q
    |||||||| ||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  23473240 ttatctctagttgtcataatgaccctactacccggtcccagcccatcaatttttaggataagatcttctatttgctctaaggtttct 23473326  T

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Target: chr3; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 23387072 - 23387222
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 369  Q
    |||||||| |||||||||||||||||||||||   | |||  |||||||| ||||| ||||||||||||||||  |||||||| ||   ||||||||||     
T  23387072 ttatctctagttgtaataatgaccctactacctgctcccaacccatcaatatttaggataagatcttctattttctctaaggtgtcc--acactatccaa 23387169  T
Q  370 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 422  Q
    ||||||||||  || |||||||||||| |||||||| || ||||||| |||||    
T  23387170 cacaatgaaaacttttttacgtgcaatccttctcacggagaaaggggattcta 23387222  T

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Target: chr3; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 23499858 - 23500008
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 369  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | ||||||||||||||||| |||||||||  ||||||| |||||     
T  23499858 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcttctatttgctctaaggtt--tctacaccatccaa 23499955  T
Q  370 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 422  Q
    |||||| |||  || ||||||  |||| |||||| | || ||||||| |||||    
T  23499956 cacaattaaaacttttttacgaccaatccttctctcggagaaaggggcttcta 23500008  T

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Target: chr3; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 23352735 - 23352822
Alignment:
Q  268 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 355  Q
    |||||||||| |||||||||||||||||||||||| || |||   ||||||||||||| ||||||||||||||||| |||||||||||    
T  23352735 gtttatctctagttgtaataatgaccctactacccggtcccaacgcatcaatttttaggataagatcttctatttgctctaaggtttc 23352822  T

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Target: chr3; HSP #23
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 23479379 - 23479529
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatccag 369  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||| | |||||||| |||||||| |||||||||  ||||||| |||||     
T  23479379 ttatctctagttgtaataatgaccctactacctggtcccagaccatcaatttttgggataagatcatctatttgctctaaggtt--tctacaccatccaa 23479476  T
Q  370 cacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttcta 422  Q
    |||||| |||  || ||||||  |||| |||||| | || ||||||| |||||    
T  23479477 cacaattaaaacttttttacgcccaatccttctctcggagaaaggggcttcta 23479529  T

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Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 23454855 - 23454940
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 355  Q
    |||||||| |||||||||||||||||||||||  || |||| |||||||||||||| |||| ||||||||||   |||||||||||    
T  23454855 ttatctctagttgtaataatgaccctactaccgggtcccagcccatcaatttttaggataaaatcttctattctctctaaggtttc 23454940  T

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Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 23405446 - 23405531
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttc 355  Q
    |||||||| |||||||| ||||||||||||||| || |||  ||||||||| || | ||||||||||||||||  |||||||||||    
T  23405446 ttatctctagttgtaatgatgaccctactacccggtcccaccccatcaattatttggataagatcttctattttctctaaggtttc 23405531  T

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Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 36003087 - 36003206
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||| |||||||| ||||||| |||| |||||||| |||||| ||| ||    ||| |||||||||||||||| ||||||  ||||||||  |||||||     
T  36003087 tttttgagcttttccaattcactttcccatgcttctttgctttttgtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagc 36003186  T
Q  152 caattacactttctgataga 171  Q
    ||||| | |||| |||||||    
T  36003187 caattgctctttttgataga 36003206  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 23464077 - 23464159
Alignment:
Q  270 ttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggt 352  Q
    |||||||| ||||||||||||||||||||||||| | |||  |||| |||| |||| |||||||| |||| ||  ||||||||    
T  23464077 ttatctctagttgtaataatgaccctactacccaatcccaacccataaattattaggataagatcatctaattaatctaaggt 23464159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 496
Target Start/End: Original strand, 23401948 - 23401979
Alignment:
Q  465 cttctttctaatcctttgaatatctccaggtt 496  Q
    ||||||||||||||||||||||||||||||||    
T  23401948 cttctttctaatcctttgaatatctccaggtt 23401979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 496
Target Start/End: Original strand, 23469521 - 23469552
Alignment:
Q  465 cttctttctaatcctttgaatatctccaggtt 496  Q
    ||||||||||||||||||||||||||||||||    
T  23469521 cttctttctaatcctttgaatatctccaggtt 23469552  T

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Target: scaffold0201 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 11995 - 12210
Alignment:
Q  52 ttttggagctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaatagg 151  Q
    |||| ||||||||||||||||||||| ||||| || |||| ||||||||   |||| || |||| |||||||| ||| ||| ||||||||||||||||||    
T  11995 tttttgagctttttcaattcattttcccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaatagg 12094  T
Q  152 caattacactttctgatagatc-tcatatccagttttaggatgtttttctcagaagacagtcaaactcaatagatgaagagaatcatgtttgttcaaatc 250  Q
     ||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| || ||||||| ||||  |||||||||||||| |||||||| ||    
T  12095 aaattacactttctgatagatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattc 12194  T
Q  251 cttaacctcatatatg 266  Q
    ||| || |||||||||    
T  12195 cttgacttcatatatg 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 268 - 425
Target Start/End: Original strand, 12239 - 12394
Alignment:
Q  268 gtttatctctcgttgtaataatgaccctactacccagtgccagtccatcaatttttagcataagatcttctatttgttctaaggtttctctacactatcc 367  Q
    |||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| ||||||||| ||||||| | || ||||  || || | ||||    
T  12239 gtttatctctagttgtaataatgaccctactacccggtcccagcccttcaatttttaggataagatctgctatttgatgtatggtt--tccacgccatcc 12336  T
Q  368 agcacaatgaaagattctttacgtgcaattcttctcacagacaaaggggtttctacgt 425  Q
    | ||||||||||  ||  ||||||||||| |||||||  || |||| || ||||||||    
T  12337 aacacaatgaaaactttcttacgtgcaatccttctcatggagaaagaggattctacgt 12394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 12896412 - 12896270
Alignment:
Q  60 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 159  Q
    ||||| ||||||| || | |||||||| |||||| ||| ||    ||| |||||||||||||| | ||||||  |||||||| | |||||| ||||| ||    
T  12896412 cttttccaattcacttgcccatgcttctttgctttttgtacgaaaatttgcacctaaaactttcaaagccaggggattgcctctacaatagccaattgca 12896313  T
Q  160 ctttctgatagat-ctcatatccagttttaggatgtttttctc 201  Q
    || | |||||||| ||||||||||  |||||||||||||||||    
T  12896312 ctctttgatagatcctcatatccatctttaggatgtttttctc 12896270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 16122319 - 16122422
Alignment:
Q  60 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 159  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||   ||||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16122319 cttttccaattcactttcccatgcttctttgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16122418  T
Q  160 cttt 163  Q
    ||||    
T  16122419 cttt 16122422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 16336881 - 16336778
Alignment:
Q  60 ctttttcaattcattttcgcatgcttccttgcttcttgaactcggattcgcacctaaaacttttatagccagatgattgcctttgcaataggcaattaca 159  Q
    ||||| ||||||| |||| |||||||| |||||| ||| ||    |||||||||||||||||| | ||| ||| |||||||| |||||||  ||||| ||    
T  16336881 cttttccaattcactttcacatgcttctttgctttttgcacgaaaattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgca 16336782  T
Q  160 cttt 163  Q
    ||||    
T  16336781 cttt 16336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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