View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_low_12 (Length: 458)

Name: NF3640_low_12
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_low_12
NF3640_low_12
[»] chr8 (2 HSPs)
chr8 (78-212)||(203230-203363)
chr8 (78-212)||(318067-318200)
[»] chr2 (2 HSPs)
chr2 (109-212)||(3204033-3204136)
chr2 (16-59)||(3203956-3203999)
[»] chr1 (2 HSPs)
chr1 (86-212)||(16450214-16450339)
chr1 (86-212)||(16459789-16459915)
[»] chr4 (1 HSPs)
chr4 (85-162)||(8160877-8160954)
[»] chr7 (1 HSPs)
chr7 (61-208)||(25904146-25904276)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 203363 - 203230
Alignment:
Q  78 aaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgat 177  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||    
T  203363 aaactgtctccatcctcacactcttgtctaaaacattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgat 203264  T
Q  178 atttgtatggacaatttttaattcaaaattaaaaa 212  Q
    ||||||||||| ||||||| |||||||||| ||||    
T  203263 atttgtatgga-aattttttattcaaaatttaaaa 203230  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 318200 - 318067
Alignment:
Q  78 aaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgat 177  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||    
T  318200 aaactgtctccatcctcacactcttgtctaaaacattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgat 318101  T
Q  178 atttgtatggacaatttttaattcaaaattaaaaa 212  Q
    ||||||||||| ||||||| |||||||||| ||||    
T  318100 atttgtatgga-aattttttattcaaaatttaaaa 318067  T

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Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 3204033 - 3204136
Alignment:
Q  109 aacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtatggacaatttttaattcaaaatta 208  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  3204033 aacattatggtttggtttactcaatttctactacaattgaatctccacttcagataacttttgtttgatatttgtatggacaattttttattcaaaatta 3204132  T
Q  209 aaaa 212  Q
    ||||    
T  3204133 aaaa 3204136  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 3203956 - 3203999
Alignment:
Q  16 aggatctaatctcatctctttgcaattcctttctttctctctcc 59  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3203956 aggatctaatttcatctctttgcaattcctttctttctctctcc 3203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 16450339 - 16450214
Alignment:
Q  86 tccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtat 185  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||||||||||    
T  16450339 tccatcctcacactcttgtctaaaccattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgatatttgtat 16450240  T
Q  186 ggacaatttttaattcaaaattaaaaa 212  Q
    ||| ||||||| |||||||||| ||||    
T  16450239 gga-aattttttattcaaaatttaaaa 16450214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 16459915 - 16459789
Alignment:
Q  86 tccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtat 185  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||||||||||    
T  16459915 tccatcctcacactcttgtctaaaccattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgatatttgtat 16459816  T
Q  186 ggacaatttttaattcaaaattaaaaa 212  Q
    ||| | |||||| ||||||||| ||||    
T  16459815 ggaaattttttatttcaaaatttaaaa 16459789  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 8160877 - 8160954
Alignment:
Q  85 ctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccaga 162  Q
    ||||||||||| ||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  8160877 ctccatcctcacactattgtttaaaatattatggtttggtttactcaatttctacttcaattgcatcaccactccaga 8160954  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 25904146 - 25904276
Alignment:
Q  61 ctgcatttagggcaagaaaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactcca 160  Q
    ||||||||| |  ||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||                 ||| |||||| |    
T  25904146 ctgcatttacgcaaagaaaactgtctccatcctcacattcttgtctaaaatattatggtttggtttactca-----------------attgccactcta 25904228  T
Q  161 gatcacttttgtttgatatttgtatggacaatttttaattcaaaatta 208  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  25904229 gataacttttgtttgatatttgtatggacaattttttattcaaaatta 25904276  T

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