View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_low_13 (Length: 437)
Name: NF3640_low_13
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 49680666 - 49680376
Alignment:
| Q |
6 |
catagggtaaaactgaatttcaaataaaataataaggataaaattagaaaggnnnnnnnngatgatatgctaaacttaaatcttatttgaaataacattt |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49680666 |
cataaggtaaaactgaatttcaaataaaataataaggataaaattagaaaggaaaaaaaagatgatatgctaaacttaaatcttatttgaaataacattt |
49680567 |
T |
|
| Q |
106 |
gaaaaataaactataagatagtaaaatagactgttttactcctatgagcttataagccaataagcta-----ttggtcttagccaaacatatacccatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
49680566 |
gaaaaataaactataagatagtaaaatagactgttttactcctatgaacttgtaagcta-taagctagtttattggtcttagccaaacatatacccaaat |
49680468 |
T |
|
| Q |
201 |
gcacacaaactagttgtattgaatattaaagtttgtacatcacctaaaaccaatcttagcttccaagttgaacttctacccttcctgcataa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49680467 |
gcacacaaactagttgtattgaatattaaagtttgtacatcacctaaaaccaatattagcttccaagttgaacttctacccctcctgcataa |
49680376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 296 - 423
Target Start/End: Complemental strand, 49679683 - 49679557
Alignment:
| Q |
296 |
ttttgttaacgcattaccttgcgggggcaataaatttgtccgtttctgtcaacgcgacaattaacatttttatcacggtaatgacattggtgacagatat |
395 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
49679683 |
ttttgttaacgcattaccttgcgggg-caataaatttgtccttttctgtcaacacgacaattaatatttttatcacggtaatgacattggtgaaagatat |
49679585 |
T |
|
| Q |
396 |
atgaaggtttgaactgaaaggttatttg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
49679584 |
atgaaggtttgaactgaaaggttatttg |
49679557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 49691498 - 49691395
Alignment:
| Q |
189 |
atatacccatatgcacacaaactagttgtattgaatattaaagtttgtacatcacctaaaaccaatcttagcttccaagttgaacttctacccttcctgc |
288 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
49691498 |
atatgcccaaatgcacacaaactagttatattgaacattaaagtatgtacatcacctaaaaccaatcctagcttccgagctggacttctacccttcctgc |
49691399 |
T |
|
| Q |
289 |
ataa |
292 |
Q |
| |
|
|||| |
|
|
| T |
49691398 |
ataa |
49691395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 49691323 - 49691242
Alignment:
| Q |
296 |
ttttgttaacgcattaccttgcgggggcaataaatttgtccgtttctgtcaacgcgacaattaacatttttatcacggtaatg |
378 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||||| |||||||| |||||| | ||||||||| ||||||| |
|
|
| T |
49691323 |
ttttgttaatgcattaccttgcgacg-caataaatttgtccgttgctgtcaacatgacaatgattttttttatcatggtaatg |
49691242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 49687264 - 49687236
Alignment:
| Q |
264 |
caagttgaacttctacccttcctgcataa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
49687264 |
caagttgaacttctacccttcctgcataa |
49687236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 18532460 - 18532505
Alignment:
| Q |
88 |
ttatttgaaataacatttgaaaaataaactataagatagtaaaata |
133 |
Q |
| |
|
|||||| ||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
18532460 |
ttatttaaaataacatctgaaaaataagctataagatagtgaaata |
18532505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 25439863 - 25439904
Alignment:
| Q |
13 |
taaaactgaatttcaaataaaataataaggataaaattagaa |
54 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
25439863 |
taaaactgaattttaaataaaataataaaggtaaaattagaa |
25439904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University