View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_low_14 (Length: 432)

Name: NF3640_low_14
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_low_14
NF3640_low_14
[»] chr7 (11 HSPs)
chr7 (127-430)||(18395921-18396231)
chr7 (68-227)||(36146599-36146759)
chr7 (126-234)||(40808414-40808522)
chr7 (68-220)||(12098050-12098202)
chr7 (133-240)||(27073633-27073740)
chr7 (133-240)||(27204573-27204680)
chr7 (133-185)||(24526140-24526192)
chr7 (133-185)||(26639154-26639206)
chr7 (133-185)||(47676379-47676431)
chr7 (147-191)||(25615730-25615774)
chr7 (133-185)||(31518668-31518720)
[»] chr2 (4 HSPs)
chr2 (13-248)||(4560904-4561138)
chr2 (133-185)||(12632960-12633012)
chr2 (133-185)||(6595249-6595301)
chr2 (139-191)||(14634075-14634127)
[»] chr4 (11 HSPs)
chr4 (99-286)||(3739325-3739511)
chr4 (133-227)||(36463645-36463738)
chr4 (82-226)||(43208064-43208207)
chr4 (133-186)||(54200149-54200202)
chr4 (198-286)||(21704137-21704225)
chr4 (133-185)||(26175879-26175931)
chr4 (133-185)||(46147598-46147650)
chr4 (133-224)||(4587792-4587881)
chr4 (147-191)||(24968978-24969022)
chr4 (140-184)||(29254368-29254412)
chr4 (127-215)||(37755162-37755250)
[»] chr8 (11 HSPs)
chr8 (84-279)||(7597380-7597576)
chr8 (127-248)||(11712240-11712361)
chr8 (139-227)||(32902436-32902524)
chr8 (133-248)||(8153572-8153686)
chr8 (52-224)||(3231971-3232145)
chr8 (133-191)||(6598839-6598897)
chr8 (133-191)||(6674292-6674350)
chr8 (139-224)||(29796572-29796656)
chr8 (133-220)||(5689109-5689196)
chr8 (133-185)||(3303913-3303965)
chr8 (133-185)||(28307838-28307890)
[»] chr5 (4 HSPs)
chr5 (116-185)||(5007424-5007493)
chr5 (82-185)||(13695896-13695999)
chr5 (140-185)||(42428680-42428725)
chr5 (133-185)||(30683163-30683215)
[»] chr3 (7 HSPs)
chr3 (68-185)||(29196578-29196696)
chr3 (133-191)||(26386724-26386782)
chr3 (133-185)||(7764341-7764393)
chr3 (82-248)||(28253846-28254011)
chr3 (133-185)||(32744669-32744721)
chr3 (195-227)||(37761788-37761820)
chr3 (133-185)||(53921746-53921798)
[»] chr1 (6 HSPs)
chr1 (133-220)||(45644598-45644685)
chr1 (116-222)||(28265792-28265898)
chr1 (133-185)||(13138217-13138269)
chr1 (133-246)||(25116407-25116519)
chr1 (133-185)||(1833395-1833447)
chr1 (133-185)||(15820180-15820232)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 127 - 430
Target Start/End: Complemental strand, 18396231 - 18395921
Alignment:
Q  127 tcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataat 226  Q
    ||||| |||||| ||||| ||||||||| ||||| |||| ||| |||||| |||||||| ||| | | || |||||||||||||||||||||||||||||    
T  18396231 tcaccaaagacattcaac-ctaaagttacctcct-tgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataat 18396134  T
Q  227 gcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaat 326  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396133 gcacaagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaat 18396034  T
Q  327 ttttcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgacattttagacaaatttcaacatt 417  Q
    |||||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  18396033 ttttcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacatt 18395934  T
Q  418 tgttttccttgat 430  Q
    |||||||||||||    
T  18395933 tgttttccttgat 18395921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 36146599 - 36146759
Alignment:
Q  68 tcactcaccaaacatgtttacaaatattttccaacccaaaagaatctatcaagagaact-tcaccgaagacactcaactctaaagttatctcctctgatt 166  Q
    ||||||||| ||  ||||||||||| ||| ||||||||| |||| || |||||| |||  | | | ||||| |||||| ||||||||| ||||| |||||    
T  36146599 tcactcacccaaggtgtttacaaatgtttcccaacccaagagaacctctcaagaaaaccataatcaaagaccctcaacactaaagttacctcctttgatt 36146698  T
Q  167 tcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatg 227  Q
    ||| ||||||||||||||| ||| | |||  |||| ||||||||||||| |||| ||||||    
T  36146699 tcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 40808522 - 40808414
Alignment:
Q  126 ttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataa 225  Q
    |||||| |||||||||||| ||||||||| ||||| |||||  |||||||| |||||||||||||  | || | |||||||||||||||||  ||||||     
T  40808522 ttcaccaaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatag 40808423  T
Q  226 tgcacaagt 234  Q
     ||||||||    
T  40808422 agcacaagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 12098050 - 12098202
Alignment:
Q  68 tcactcaccaaacatgtttacaaatattttccaacccaaaagaatctatcaagagaact-tcaccgaagacactcaactctaaagttatctcctctgatt 166  Q
    ||||||||| || |||||||||| | ||| ||||||||| |||| || |||||| |||  | | | ||||| |||||| ||||||||| ||||| |||||    
T  12098050 tcactcacccaagatgtttacaa-tgtttcccaacccaagagaacctctcaagaaaaccctaatcaaagaccctcaaccctaaagttacctcctttgatt 12098148  T
Q  167 tcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtctta 220  Q
    ||| ||||||||||||||| ||| | |||  |||| ||||||||||||| ||||    
T  12098149 tcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagcctta 12098202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 27073740 - 27073633
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaa 232  Q
    |||||||||||   |||| ||||||||| ||||| | || |||| |||||||| ||||  | |  ||||| |||||||||||||||||||||||||| ||    
T  27073740 aagacactcaatcataaaattatctcctttgattccttatgtttatctctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaa 27073641  T
Q  233 gtcccgag 240  Q
    | ||||||    
T  27073640 gccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 27204573 - 27204680
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaa 232  Q
    |||||||||||   |||| ||||||||| ||||| | || |||| |||||||| ||||  | |  ||||| |||||||||||||||||||||||||| ||    
T  27204573 aagacactcaatcataaaattatctcctttgattccttatgtttatctctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaa 27204672  T
Q  233 gtcccgag 240  Q
    | ||||||    
T  27204673 gccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 24526140 - 24526192
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  24526140 aagaccctcaaccctaaagttatctcctttgatttccctagtttttctctctt 24526192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 26639206 - 26639154
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||  |||||||    
T  26639206 aagatactcaaccctaaagttatctcctttgatttcctaagtttcactctctt 26639154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 47676379 - 47676431
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||||||||| |||||||| |||||| ||||||||    
T  47676379 aagaccctcaaccctaaagttatctcctttgatttcccaagtttctctctctt 47676431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 25615774 - 25615730
Alignment:
Q  147 taaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||    
T  25615774 taaagttaactcctttgatttcctaagttttcctctcttgaagtt 25615730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 31518720 - 31518668
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| || ||| ||||||||||||||| |||||||| ||||||| |||||||    
T  31518720 aagacccttaaccctaaagttatctcctttgatttccaaagttttcctctctt 31518668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 4561138 - 4560904
Alignment:
Q  13 aatatctcataaacaaaacttaatttctataatttttcgaagagactcgatgatctcactcaccaaacatgtttacaaatattttccaacccaaaagaat 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||     
T  4561138 aatatctcataaacaaaacctaatttctataatttttcgaagagactcgatgatttcactcaccaaacatgtttacaaatatttccca-cccaaaagaac 4561040  T
Q  113 ctatcaagagaacttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatg 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4561039 ctatcaagagaacttcaccaaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatg 4560940  T
Q  213 aagtcttatataatgcacaagtcccgagaaaatcgt 248  Q
    |||||||||| |||||||||||||||||||||||||    
T  4560939 aagtcttatacaatgcacaagtcccgagaaaatcgt 4560904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 12632960 - 12633012
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    |||||||||||| ||||||||||||||| || ||||| |||||| ||||||||    
T  12632960 aagacactcaaccctaaagttatctcctttggtttcccaagtttctctctctt 12633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 6595249 - 6595301
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||| | ||||||||||||||| ||||||||    
T  6595249 aagaccctcaaccctaaagttacctcatttgatttcctaagtttctctctctt 6595301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 14634075 - 14634127
Alignment:
Q  139 ctcaactctaaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    |||||||||||||||| ||||| |||||||| |||||||  |||||| |||||    
T  14634075 ctcaactctaaagttacctcctttgatttcccaagttttcttctcttgaagtt 14634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 99 - 286
Target Start/End: Original strand, 3739325 - 3739511
Alignment:
Q  99 caacccaaaagaatctatcaagagaacttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaa 198  Q
    ||||||||||||| || |||||||||| ||||| |||||  ||||| ||||||||||||| | |||||| |||||||| |||||||| ||  | | || |    
T  3739325 caacccaaaagaacctctcaagagaacctcaccaaagaccgtcaacactaaagttatctcatttgattttctaagtttctctctcttgaa-atgtactca 3739423  T
Q  199 aaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagtta 286  Q
    |||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||||||||||||| ||||    
T  3739424 aaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttgccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 36463645 - 36463738
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatg 227  Q
    ||||| |||||  ||||||||| ||||| |||||||| ||||||||||||||| ||| | | || |||| ||||||||||||| |||| ||||||    
T  36463645 aagaccctcaatcctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 43208064 - 43208207
Alignment:
Q  82 tgtttacaaatattttccaacccaaaagaatctatcaagagaa-cttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttct 180  Q
    |||||| |||| ||||||||| |||| |||| | ||||||||| | ||||| ||||| |||| ||||||||||||||  |  ||||||  |||||| |||    
T  43208064 tgtttataaatgttttccaactcaaa-gaatttctcaagagaatcctcaccaaagacgctcagctctaaagttatcttattcgatttctcaagtttatct 43208162  T
Q  181 ctctttaagttattctaaaaacatgaagaatgaagtcttatataat 226  Q
    || || |||   | || |||||||||||||||||||||||||||||    
T  43208163 cttttgaagcg-tactcaaaacatgaagaatgaagtcttatataat 43208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 54200149 - 54200202
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttt 186  Q
    ||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||||    
T  54200149 aagaccctcaaccctaaagttacctcctttgatttcctaagtttctctctcttt 54200202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 21704137 - 21704225
Alignment:
Q  198 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagtta 286  Q
    |||||||||| |||||||||||| ||| |||||| |||| |  ||||||||  | |||||||  ||||| |||||||||||||| ||||    
T  21704137 aaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgtgccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 26175879 - 26175931
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||||||||||||| ||||| |||||||| |||||| ||||||||    
T  26175879 aagaccctcaactctaaagttacctcctttgatttcccaagtttctctctctt 26175931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 46147598 - 46147650
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  46147598 aagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctctt 46147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 4587881 - 4587792
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatata 224  Q
    |||||||| ||| ||||||||||||| | ||  |||||| ||||  ||||||| ||| | | || |||||||||||||||||||||| ||||    
T  4587881 aagacacttaaccctaaagttatctcatttgtattcctaggttt--ctctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 24969022 - 24968978
Alignment:
Q  147 taaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    |||||||| ||||| |||||||| ||||||||||||||| |||||    
T  24969022 taaagttacctcctttgatttcccaagtttttctctcttgaagtt 24968978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 29254412 - 29254368
Alignment:
Q  140 tcaactctaaagttatctcctctgatttcctaagtttttctctct 184  Q
    ||||| ||||||||||||||| |||||||| |||||| |||||||    
T  29254412 tcaaccctaaagttatctcctttgatttcccaagtttctctctct 29254368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 37755162 - 37755250
Alignment:
Q  127 tcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaag 215  Q
    ||||| ||||| |||||  ||||||||| ||||| |||||| | |||||| |||||||| ||  |  ||| ||||||||||||||||||    
T  37755162 tcaccaaagactctcaatcctaaagttacctcctttgattttccaagtttctctctcttgaaactcatctcaaaacatgaagaatgaag 37755250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 279
Target Start/End: Complemental strand, 7597576 - 7597380
Alignment:
Q  84 tttacaaatattttccaacccaaaagaatctatcaagagaact-tcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctct 182  Q
    ||||||||| ||| |||| |||| |||| || ||||||||||  ||||| ||||| || |||  |||||||||||||  |||||||  |||||| |||||    
T  7597576 tttacaaatgtttcccaatccaagagaaactctcaagagaaccctcaccaaagactcttaaccataaagttatctcccttgatttctcaagtttatctct 7597477  T
Q  183 ctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 279  Q
    ||| |||   |||  |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597476 cttgaagcc-ttcacaaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 11712240 - 11712361
Alignment:
Q  127 tcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataat 226  Q
    ||||| |||||||||||| ||||||||| ||| | ||||  ||||||||| |||||||| ||| | | |  ||||||| |||||||||  |||||||| |    
T  11712240 tcaccaaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagt 11712339  T
Q  227 gcacaagtcccgagaaaatcgt 248  Q
    ||||| ||||| ||||||||||    
T  11712340 gcacatgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 32902436 - 32902524
Alignment:
Q  139 ctcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatg 227  Q
    |||||| ||||||||| ||| |||||||||| |||||| |||||||| |||   | || ||||||||||||||||||||||||| ||||    
T  32902436 ctcaaccctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 8153686 - 8153572
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaa 232  Q
    ||||| ||||||  |||| ||| ||||| ||||||||||| ||| |||||||| |||   ||| ||||||||||||||||||| ||| ||||||| ||||    
T  8153686 aagactctcaaccttaaaattacctcctttgatttcctaaatttctctctcttaaagcc-ttcaaaaaacatgaagaatgaagccttttataatgtacaa 8153588  T
Q  233 gtcccgagaaaatcgt 248  Q
    |  |||||||||||||    
T  8153587 gatccgagaaaatcgt 8153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 3231971 - 3232145
Alignment:
Q  52 aagagactcgatgatctcactcaccaaacatgtttacaaatattttccaacccaaaagaatctatcaagagaacttcaccgaagacac--tcaactctaa 149  Q
    ||||||||| ||||  |||| |||| ||  ||||||| ||| ||| ||||| ||| |||| || |||| ||||||||||| |||||||  | ||||||||    
T  3231971 aagagactcaatgaattcacccacccaaggtgtttactaatgtttcccaactcaagagaacctctcaaaagaacttcaccaaagacactattaactctaa 3232070  T
Q  150 agttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatata 224  Q
    | ||| |  || |||||||| |||||| | |||||| | | | | || |||||||||||||||||| ||||||||    
T  3232071 acttaccatctttgatttcccaagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 6598897 - 6598839
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    ||||| |||||| ||||||||||||||| |||||||| ||||||| ||||||| |||||    
T  6598897 aagaccctcaaccctaaagttatctcctttgatttcccaagttttcctctcttgaagtt 6598839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 6674350 - 6674292
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    ||||| |||||| ||||||||||||||| |||||||| ||||||| ||||||| |||||    
T  6674350 aagaccctcaaccctaaagttatctcctttgatttcccaagttttcctctcttgaagtt 6674292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 29796572 - 29796656
Alignment:
Q  139 ctcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatata 224  Q
    |||||| ||||||||| ||||| |||||||  |||||| |||||||| ||||  | || |||||||||||||||||| ||||||||    
T  29796572 ctcaaccctaaagttacctcctttgatttctcaagtttctctctcttgaagtc-tcctcaaaacatgaagaatgaagccttatata 29796656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 5689196 - 5689109
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtctta 220  Q
    ||||| |||||| ||||||||||||||| ||||||||  ||||| |||||||| ||| | ||   |||| ||||||||||||| ||||    
T  5689196 aagaccctcaaccctaaagttatctcctttgatttccctagtttctctctcttgaagctcttaccaaaaaatgaagaatgaagcctta 5689109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 3303913 - 3303965
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| ||||||  |||||||| ||||| |||||||| |||||||||||||||    
T  3303913 aagaccctcaaccgtaaagttacctcctttgatttcccaagtttttctctctt 3303965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 28307838 - 28307890
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    |||||||||||||||||||||| ||||| ||   |||||||||| ||||||||    
T  28307838 aagacactcaactctaaagttacctcctttgtaatcctaagtttctctctctt 28307890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 5007493 - 5007424
Alignment:
Q  116 tcaagagaacttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    |||||||||| ||||| |||| ||||||| ||||||||| ||||| |||||| |||||||||||||||||    
T  5007493 tcaagagaacctcaccaaagatactcaaccctaaagttacctcctttgattttctaagtttttctctctt 5007424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 13695896 - 13695999
Alignment:
Q  82 tgtttacaaatattttccaacccaaaagaatctatcaagagaacttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctc 181  Q
    ||||||||||| ||||||| | ||| | || || |||||||||| ||||| |||||||||||| |||||| ||||| || |||||||  |||||| ||||    
T  13695896 tgtttacaaatgttttccagctcaataaaacctctcaagagaacctcaccaaagacactcaaccctaaagctatcttctttgatttctcaagtttctctc 13695995  T
Q  182 tctt 185  Q
    ||||    
T  13695996 tctt 13695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 42428680 - 42428725
Alignment:
Q  140 tcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| ||||||||||||||| |||||||| |||||| ||||||||    
T  42428680 tcaaccctaaagttatctcctttgatttcccaagtttctctctctt 42428725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 30683163 - 30683215
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||| ||| |||||||||||||| |||||| ||||||||    
T  30683163 aagaccctcaaccctaaaattacctcctctgatttcccaagtttctctctctt 30683215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 29196578 - 29196696
Alignment:
Q  68 tcactcaccaaacatgtttacaaatattttccaacccaaaagaatctatcaagagaact-tcaccgaagacactcaactctaaagttatctcctctgatt 166  Q
    ||||||||| ||  ||||||||||| ||| ||||||||| |||| || |||||| |||  | | | ||||| |||||| ||||||||| ||||| |||||    
T  29196578 tcactcacccaaggtgtttacaaatgtttcccaacccaagagaacctctcaagaaaaccctaatcaaagaccctcaaccctaaagttacctcctttgatt 29196677  T
Q  167 tcctaagtttttctctctt 185  Q
    ||| |||||||||||||||    
T  29196678 tcccaagtttttctctctt 29196696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 26386724 - 26386782
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagtt 191  Q
    ||||| |||||| ||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  26386724 aagactctcaaccctaaagttacctcctttgatttcccaagttttcctctctttaagtt 26386782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 7764393 - 7764341
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||||||||||||| ||||| |||||||| |||||| ||||||||    
T  7764393 aagaccctcaactctaaagttacctcctttgatttcccaagtttctctctctt 7764341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 28253846 - 28254011
Alignment:
Q  82 tgtttacaaatattttccaacccaaaagaatctatcaagagaact-tcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttct 180  Q
    ||||||||| | |||||||||  || |||| |  ||||||||||  ||||| ||||  |||||| ||||||||||||| | |||||||||||||||  ||    
T  28253846 tgtttacaattgttttccaactaaagagaacccctcaagagaaccatcaccaaagatcctcaaccctaaagttatctcatttgatttcctaagttt--ct 28253943  T
Q  181 ctctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 248  Q
     || | ||| | | |||||||||||| ||||||| ||||||||| ||| ||  | | |||||||||||    
T  28253944 atcgtgaagctctactaaaaacatgatgaatgaaatcttatatagtgctcagattctgagaaaatcgt 28254011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 32744669 - 32744721
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  32744669 aagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctctt 32744721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 37761788 - 37761820
Alignment:
Q  195 ctaaaaacatgaagaatgaagtcttatataatg 227  Q
    ||||||||||||||||| |||||||||||||||    
T  37761788 ctaaaaacatgaagaataaagtcttatataatg 37761820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 53921746 - 53921798
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||| | |||||||| |||||||||||||||    
T  53921746 aagactctcaaccctaaagttacctcatttgatttcccaagtttttctctctt 53921798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 45644598 - 45644685
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtctta 220  Q
    ||||| |||||| ||||||||||||||| ||||||||  |||||||||||||| ||| | |||  |||| ||||||||| ||| ||||    
T  45644598 aagaccctcaaccctaaagttatctcctttgatttccctagtttttctctcttgaagctcttcccaaaaaatgaagaataaagcctta 45644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 28265792 - 28265898
Alignment:
Q  116 tcaagagaacttcaccgaagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaag 215  Q
    |||||||||| | | | ||||| |||||| ||||||||| ||||| ||||||||  ||||| |||||||| ||| | |||  |||| |||||||||||||    
T  28265792 tcaagagaacctaatcaaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaag 28265891  T
Q  216 tcttata 222  Q
     ||||||    
T  28265892 ccttata 28265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 13138217 - 13138269
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  13138217 aagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctctt 13138269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 25116519 - 25116407
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctttaagttattctaaaaacatgaagaatgaagtcttatataatgcacaa 232  Q
    |||||||||||||||||||||  ||| | ||||||   |||||| |||||||| |   | | || |||||||||||||||||| |||||||| ||||||     
T  25116519 aagacactcaactctaaagttccctcgtttgatttttcaagtttctctctcttcatactct-ctcaaaacatgaagaatgaagacttatatagtgcacat 25116421  T
Q  233 gtcccgagaaaatc 246  Q
    | || |||||||||    
T  25116420 gacctgagaaaatc 25116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 1833447 - 1833395
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| ||||||  |||||||||||||| |||||||| |||||| ||||||||    
T  1833447 aagaccctcaaccttaaagttatctcctttgatttcccaagtttctctctctt 1833395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 15820232 - 15820180
Alignment:
Q  133 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctctt 185  Q
    ||||| |||||| ||||||||| ||| | |||||||| |||||||||||||||    
T  15820232 aagaccctcaaccctaaagttacctcttttgatttcccaagtttttctctctt 15820180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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