View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_15 (Length: 425)
Name: NF3640_low_15
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 43 - 411
Target Start/End: Original strand, 36631442 - 36631805
Alignment:
| Q |
43 |
tttttaaaggtgatttacctggttacaggttaaccaagttgttaacactcacccctatttaattnnnnnnntatgtggcacgttaaacatcaaacaccac |
142 |
Q |
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| T |
36631442 |
tttttaaaggtgatttacctggttacaggttaaccaagttgttaacactcacccctatttaattaaaaaaatatgtggcacgttaaacatcaaacaccac |
36631541 |
T |
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| Q |
143 |
gcttcaatcacccatcaacacaaacagctataatcacacaccatcaatttctccttgcgattaacttctaacaccaaattactgctataat--------- |
233 |
Q |
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| T |
36631542 |
gcttcaatcacccatcaacacaaacagctataatcacacaccatcaatttctccttgcgattaacttctaacaccaaattactgccgtaatcatgtaaga |
36631641 |
T |
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| Q |
234 |
--------aataaaaccaaccttaagcagtctgacaaccttaacaattagagaaaacaaagagggaatcatcttattcaaccttacccttattttcgcct |
325 |
Q |
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| T |
36631642 |
tgtgaaccactaaaaccaaccttaagcagtctgacaaccttaacaattagagaaaacaaagagggaatcatcttattcaa-----------------cct |
36631724 |
T |
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| Q |
326 |
tcccatcaccatcccatcccaagaagaaaattagaaacacataacagagacatgcataaaaagaggacgtgattgtatgatatata |
411 |
Q |
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| T |
36631725 |
tcccatca-----ccatctcaagaagaaaattagaaacacagaacagagaaatgcataaaaagaggacgtgattgtatgatatata |
36631805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 36631001 - 36631036
Alignment:
| Q |
17 |
ccagtattgttaggccacgtcaaccatttttaaagg |
52 |
Q |
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| T |
36631001 |
ccagtattgttaggccacgtcaaccatttttaaagg |
36631036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9399582 - 9399521
Alignment:
| Q |
21 |
tattgttaggccacgtcaaccatttttaaaggtgatttacctggttacaggttaaccaagtt |
82 |
Q |
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| T |
9399582 |
tattgttaagccacgtcaaccattttaaaaagttatttacctggttataggctaaccaagtt |
9399521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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