View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_low_16 (Length: 422)
Name: NF3640_low_16
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 26430103 - 26430507
Alignment:
| Q |
7 |
tatccctaccactaaagcagactcactaaagaataaatactacatatgataaactatcaacaaacaatatatattggatgtaatatatacaataaaaatg |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| || |
|
|
| T |
26430103 |
tatccataccactaaagcagactcactaaagaataaatactacatatgataaactatcaacaaacaatatatattgtatgcaatttatacaataaaactg |
26430202 |
T |
|
| Q |
107 |
aatgtaagaccttgggtgaccaaaagctcggtgacctttctaacatgaaactacttaaatatatcttttattcctaaattcattagacacacacatacag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26430203 |
aatgtaagaccttgggtgaccaaaagctcagtgacctttctaacatgaaactacttaaatatatcttttattcctaaattcattagacacacgcatacag |
26430302 |
T |
|
| Q |
207 |
aacttatgaacctgctggaccaaaactttaagacatccttcaagtttcactatatcattcattgtttattcctattcttgatataaaacattcaatacat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26430303 |
aacttatgaacctgctggaccaaaactttaagacatgcttcaagtttcactatatcattcattgtttattcctattcttgatataaaacattcaatacat |
26430402 |
T |
|
| Q |
307 |
tgcatattatttcttcaaaatagtcatttgcaatttaactctcacccttctcttctataacatttgcagctctgcacttttcatcactgtgaaacttttc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26430403 |
tgcatattatttcttcaaaatagtcatttgcaatttaactctcacccttctcttctataacatttgcagctctgcacttttcatcactgtgaaacttttc |
26430502 |
T |
|
| Q |
407 |
ccttt |
411 |
Q |
| |
|
||||| |
|
|
| T |
26430503 |
ccttt |
26430507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University