View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_18 (Length: 404)
Name: NF3640_low_18
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 8151723 - 8151592
Alignment:
| Q |
11 |
atcatcactcgaaataaagcacacttagtggaaaaaatgatacaatcaagaagagggtatcgactacgagaaggcatacactcatgtagtttgccttgaa |
110 |
Q |
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| T |
8151723 |
atcatcactggaaataaagcacgcttagtggaaaaaatgatacaatcaagaagagggt-tcgactacgagaagacatacactcatgtagtccgccttgaa |
8151625 |
T |
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| Q |
111 |
aagattagactcctttcgcaatttgcttgttgc |
143 |
Q |
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| T |
8151624 |
aagattagactcctttcgcgatttgcttgttgc |
8151592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 8151411 - 8151293
Alignment:
| Q |
184 |
atgaccaatcgttaaatattcgtatatttaatccatgtggcccccttgttttatttatcctaaaaaatagacctatttatcattctaaatataggtgtag |
283 |
Q |
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| T |
8151411 |
atgaccaatcattgaatatttgtgcatttaatccatgtcacccc-ttgttttatttatcctaaaaaatagacctatttatcattctaaatataggtgtag |
8151313 |
T |
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| Q |
284 |
agcattattaggtaaatcgt |
303 |
Q |
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| T |
8151312 |
agcattattaggtaaatcgt |
8151293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 8151263 - 8151205
Alignment:
| Q |
333 |
ggttttccaatttggtacgtttctgtactctaaaatttcttttcagctatgcttattct |
391 |
Q |
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| T |
8151263 |
ggttttccaatttggtacgtttctgtactctaaaatttcttttcagctacgcttattct |
8151205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 8151485 - 8151451
Alignment:
| Q |
143 |
ccaagattatatttttaaattaatgaagattctct |
177 |
Q |
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| T |
8151485 |
ccaagattatattttaaaattaatgaagattctct |
8151451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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