View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_29 (Length: 327)
Name: NF3640_low_29
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 34686636 - 34686349
Alignment:
| Q |
20 |
gtgatagtcattttggtctctgaatgcatatataataagttaaatactatactatactccataaaacaaatatattgcttgttttggtatttataaaatg |
119 |
Q |
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| T |
34686636 |
gtgatggtcattttggtctctgaatgcatatataataagttaaatactatactatactccataaaacaaatatattggttgttttggtatttatgaaatg |
34686537 |
T |
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| Q |
120 |
ttgtttcatacatactaaatgttgcattgaactttaaaacgacaatgaaaaaagaatctgagggatataacatccttacatctataatttcatatagtga |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
34686536 |
ttgtttcatacatact-aatgttgcattgaactttaaaacgacaattaaaaaagaat-agagggatataacatccttacatctataatttcatatataga |
34686439 |
T |
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| Q |
220 |
gatatttgaggatggaatnnnnnnnnnnnnccatattagtaaaaatgtagtttaggcatgcaaattttatatgtacttttgagcaataaaaa |
311 |
Q |
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| T |
34686438 |
gatatttgaggatggaat--aaaacaaaaaccatattagtaaaaatgtaatttaggcatgcaaattttatatgtacttttgagcaataaaaa |
34686349 |
T |
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