View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_3 (Length: 727)
Name: NF3640_low_3
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 100 - 396
Target Start/End: Original strand, 32982277 - 32982573
Alignment:
| Q |
100 |
gcataggagatatgggatgggattaccctcttattaattcctatatgtattaattataactgaatcttatcacagccatctccaagttgccctgataaat |
199 |
Q |
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| T |
32982277 |
gcataggagatatgggatgggattaccctcttattaattcctatatgtattaattataactgaatcttatcacagccatctccaagttgccctgataaat |
32982376 |
T |
|
| Q |
200 |
cttcactacttctatactccgcagtgtccacaacattcatatcagcctcagctgtggttgtctctgtcaccaattgtacagttttctttgttgcatccca |
299 |
Q |
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| T |
32982377 |
cttcactacttctatactccacagtgtccacaacattcatatcagcctcagctgtggttgtctcagtcaccaattgtacagttttctttgttgcatccca |
32982476 |
T |
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| Q |
300 |
tgcagtttccacattttccttaccaacttcttcaagtacctctcttgcattctctgacccttcatttattgctcctaatggatcaccaccctgaatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32982477 |
tgcagtttccacattttccttaccaacttcttcaagtacctctcttgcattctctgacccttgatttattgctcctaatggatcaccaccctgaatt |
32982573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 478 - 695
Target Start/End: Original strand, 32982654 - 32982874
Alignment:
| Q |
478 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
577 |
Q |
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| T |
32982654 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
32982753 |
T |
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| Q |
578 |
caagaaagggaaatgtttttgccatttttcagggtgatgatatgtgacaatacaat---tattatcttatatgtcttgatgcctaagtatgtgaatgaat |
674 |
Q |
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| T |
32982754 |
caagaaaggtaaacgtttttgccatttttcagtgtgatgatatgtgacaatacaattactaatatcttatatgtcttgatgcctaagtatgtgaatgaat |
32982853 |
T |
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| Q |
675 |
taatctagctcttatatatat |
695 |
Q |
| |
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||||||||||||||||||||| |
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| T |
32982854 |
taatctagctcttatatatat |
32982874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 9e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 478 - 695
Target Start/End: Original strand, 27038193 - 27038402
Alignment:
| Q |
478 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27038193 |
ttgaggtatacttgagtatgaatgtgagattgttttgcaattgagaagttgaaaactttggcagcattaggagtggttttgaccaattctttacactgcg |
27038292 |
T |
|
| Q |
578 |
caagaaagggaaatgtttttgccatttttcagggtgatgatatgtgacaatacaattattatcttatatgtcttgatgcctaagtatgtgaatgaattaa |
677 |
Q |
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| T |
27038293 |
caagaaagtgaaatgtttttgccatttttca--gtgatgataggtgacaat--tattaatatct--tatgtcttgatgc--aagtatgtgaatgaattaa |
27038384 |
T |
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| Q |
678 |
tctagctcttatatatat |
695 |
Q |
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||||||| ||||||||| |
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| T |
27038385 |
tctagcttatatatatat |
27038402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 215 - 396
Target Start/End: Original strand, 27037952 - 27038142
Alignment:
| Q |
215 |
actccgcagtgtccacaacattcatatcagcctcagctgtggttgtctctgtcaccaattgtacagttttctttgttgcatcccatgcagtttccacatt |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
27037952 |
actccgcagtgtccacggcattcatatcagcctcagcagtggttgtctctgtcaccaattgtacagtgttctttgtagcatcccatgcagtttccacatt |
27038051 |
T |
|
| Q |
315 |
ttccttaccaacttcttca---------agtacctctcttgcattctctgacccttcatttattgctcctaatggatcaccaccctgaatt |
396 |
Q |
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||||||||||||||||||| || || |||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
27038052 |
ttccttaccaacttcttcaacactctccagcacttctcttgctttctctgatccttgatttattgctcctaatggatcaccaccctgaatt |
27038142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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