View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_low_32 (Length: 308)
Name: NF3640_low_32
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 33252443 - 33252163
Alignment:
| Q |
10 |
aagaatatgattcccaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
109 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33252443 |
aagattatgattcctaatacctttcattccattctacttacatgagtttactcttattctaattaaaaaggtatttcatactcccaaggttattggccac |
33252344 |
T |
|
| Q |
110 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctatattttgagtagaatgactccttttcttaactcgtgag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33252343 |
aatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctata--ttgagtagaatgactccttttcttaactcgtgag |
33252246 |
T |
|
| Q |
210 |
tttcatatgacgatattccaatagatcgaaagccttaccc-ttccttatcactacaaaatttcaagatataacttcttcaatt |
291 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
33252245 |
tttcatatgacgatattcgaatagatcgaaagccttaccctttccttatcactgcaaaatttcaagatataacttctttaatt |
33252163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University