View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_34 (Length: 295)
Name: NF3640_low_34
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 4819713 - 4819435
Alignment:
| Q |
1 |
tccagcaatggcagtcattgcattaat----ccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaactt |
96 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4819713 |
tccagcaatggcagtcattgcattaatatgtccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaagtt |
4819614 |
T |
|
| Q |
97 |
cctatctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaa |
194 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4819613 |
cctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaa |
4819514 |
T |
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| Q |
195 |
tagtgtctgtatccgtcaacacgtcgacagtcttggtctttggagcttgaaacgccgcaaatttgacttattgggagag |
273 |
Q |
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| T |
4819513 |
tagtgtctgtatccgtcaacacgtcgacagttttggtctttggagcttgaaacgccgcaaatttgacttattgggagag |
4819435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 10779477 - 10779288
Alignment:
| Q |
27 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
124 |
Q |
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| T |
10779477 |
tccatccattgacgtagcagtggtcgatatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgta |
10779378 |
T |
|
| Q |
125 |
gtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatccgtcaaca |
215 |
Q |
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| T |
10779377 |
gtaaagtaatgtcgcagcaaga-ccttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtttgtatttgtcaaca |
10779288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 4829482 - 4829301
Alignment:
| Q |
27 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
124 |
Q |
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|||||||| ||||||||| ||||| ||||||| | ||| | | |||||| ||||| ||||| |||||||||| ||||| ||||| ||||||||||| || |
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| T |
4829482 |
tccatccactgaagtagcagtcgtcgatatcttgtaattgagcattgcactgtggaacaaccatcaacttcccatctacgagcctggtcttgatgatgta |
4829383 |
T |
|
| Q |
125 |
gtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatc |
207 |
Q |
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| T |
4829382 |
gcaaagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaagctgacatagtgtttgtatc |
4829301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 4804060 - 4803905
Alignment:
| Q |
53 |
atatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--tagtaaagcaatgtcgcggcaagagctt |
150 |
Q |
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|||||||||||||| | ||||||| | | | | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||| | | |
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| T |
4804060 |
atatctcgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtacct |
4803961 |
T |
|
| Q |
151 |
tttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtat |
206 |
Q |
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| T |
4803960 |
tgtcttcaacactgatgttgaaaaacatgtctatgaagctgacattgtgtttgtat |
4803905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 4797949 - 4798069
Alignment:
| Q |
89 |
atcaacttcctatctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacga |
186 |
Q |
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|||||||| | |||||||| || |||||||||||| ||||||||||| ||||||||||| | |||||||||||| | | ||| ||||||||||| | || |
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| T |
4797949 |
atcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtccatga |
4798048 |
T |
|
| Q |
187 |
agttgaaatagtgtctgtatc |
207 |
Q |
| |
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|| ||| | ||||| |||||| |
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| T |
4798049 |
agctgacacagtgtttgtatc |
4798069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 4824574 - 4824479
Alignment:
| Q |
46 |
gtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatg--atagtaaagcaatgtcgc |
139 |
Q |
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| T |
4824574 |
gtcgttgatatcacaaaatcgcgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgc |
4824479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 4835791 - 4835691
Alignment:
| Q |
89 |
atcaacttcctatctatgagcccggtcttgatga---------tagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatg |
179 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||| | |||||||||||||| | || ||||||||| |
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| T |
4835791 |
atcaacttcctatctatgagcccgatcttgatgaatgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatg |
4835692 |
T |
|
| Q |
180 |
t |
180 |
Q |
| |
|
| |
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|
| T |
4835691 |
t |
4835691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 4815029 - 4814910
Alignment:
| Q |
100 |
atctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatag |
197 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||| || | |||| | ||||||| | ||| | |||||||||||||| || || |||| |||| |
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| T |
4815029 |
atctatgagcccgatcttgatgatgtattaaagcaatgttgctgtaagaaccttttctttggaattgatgttgaaaaacatgtttatgattttgacatag |
4814930 |
T |
|
| Q |
198 |
tgtctgtatccgtcaacacg |
217 |
Q |
| |
|
| |||||||||||||||| |
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| T |
4814929 |
gttttgtatccgtcaacacg |
4814910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 18937667 - 18937574
Alignment:
| Q |
123 |
tagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacgaagttgaaatagtgtctgtatccgtcaacac |
216 |
Q |
| |
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|||||||| |||||| |||||| | | ||||||| |||||| | |||||||| ||| ||||||||||||| || || ||||||||||||||| |
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| T |
18937667 |
tagtaaagtaatgtcacggcaaaaaccttttctttagcattgatgttgaaaagcatttctacgaagttgacattgttattgtatccgtcaacac |
18937574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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