View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_35 (Length: 293)
Name: NF3640_low_35
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 3036733 - 3036853
Alignment:
| Q |
132 |
aaggatgtataatattcatttttcatagtctcctttatttgcaaatgttatacgtcactcaacttatactacacaacttaacaataataaaaatattgtg |
231 |
Q |
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| T |
3036733 |
aaggatgtataatattcattttttatagtctcctttatttgcaaatgttatacgtcactcaacttatactacacaacttaacaacaataaaaatattgtg |
3036832 |
T |
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| Q |
232 |
agaaccggtttttccatctct |
252 |
Q |
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|||| |||||||||||||||| |
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| T |
3036833 |
agaatcggtttttccatctct |
3036853 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 3050231 - 3050310
Alignment:
| Q |
195 |
ttatactacacaacttaacaataataaaaatattgtgagaaccggtttttccatctctgtaaaattatggaccctaattc |
274 |
Q |
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| T |
3050231 |
ttatactacacaacttaacaacaataaaaatatcgtgagaatcggtttttctatctctgtaaatttatggaccctaattc |
3050310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 3050153 - 3050214
Alignment:
| Q |
149 |
atttttcatagtctcctttatttgcaaatgttatacgtcactcaacttatactacacaactt |
210 |
Q |
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|||||| |||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3050153 |
attttttatagtctcgtttacttgcaaatgttatacctcactaaacttatactacacaactt |
3050214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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