View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_38 (Length: 279)
Name: NF3640_low_38
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 52407208 - 52407365
Alignment:
| Q |
57 |
aatggcattggcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatctgcactcagtcacacacatgctgc |
156 |
Q |
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| T |
52407208 |
aatggcattggcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatctgcactcagtcacacacatgctgc |
52407307 |
T |
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| Q |
157 |
tgatcaagtgaaaatcatcgatgccattaaagaggctggtaatgttaaggttatcctt |
214 |
Q |
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| T |
52407308 |
tgatcaattgaaaatcatccatgccattaaagaggctggtaatgttaaggttatcctt |
52407365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 52407133 - 52407183
Alignment:
| Q |
6 |
aacaccatctcttaatttaccttacattatatcatgaacatccaggcatat |
56 |
Q |
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| T |
52407133 |
aacaccatctcttaatttaccttacattatatcatgaacatccaggcatat |
52407183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 52400396 - 52400537
Alignment:
| Q |
67 |
gcagggggatctctacgataatgagagcttggtgaaagcaatgaagcaggtagacgtggtcatatctgcactcagtcacacacatgctgctgatcaagtg |
166 |
Q |
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| T |
52400396 |
gcagggggatctgtataatcatgagaacttggtgaaagcaatcaagcaggtagatgtggtcatatctacggtaggccacgctcagattgaggatcaagtg |
52400495 |
T |
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| Q |
167 |
aaaatcatcgatgccattaaagaggctggtaatgttaaggtt |
208 |
Q |
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| T |
52400496 |
aagattatcgctgcaattaaggaggctggtaatgttaaggtt |
52400537 |
T |
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