View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_46 (Length: 262)
Name: NF3640_low_46
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 39393413 - 39393644
Alignment:
| Q |
18 |
gattccgtccaaagtccaatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaa-ccccgtcaac |
116 |
Q |
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| T |
39393413 |
gattccgtcaaaagtccaatatatcttccaattccaaactattttttcttctcattttcattcacttagcctcctataccacaaggtaacccccgtcaac |
39393512 |
T |
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| Q |
117 |
ctagtacacacgttcttttgctctttttctcctatattcctgtctcattactttttccaacattctaattatataacccttcctaaattcatgatttacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39393513 |
ctagtacacacgttcttttgctctttttctcctatattcctgtctcattac-ttttccaacattctaattatataacccttcctaaattcatgatttacc |
39393611 |
T |
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| Q |
217 |
tatcattaactattcaaatcattcattaccttc |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39393612 |
tatcattaactattcaaatcattcattaccttc |
39393644 |
T |
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