View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_48 (Length: 252)
Name: NF3640_low_48
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43645929 - 43645699
Alignment:
| Q |
1 |
tgttgatatccattatattaaatcccattgactccgaggatgagcactcacagttgggaaaacaaaaagatctgtttaatgccctggaaaattctataac |
100 |
Q |
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| T |
43645929 |
tgttgatatccattatattacatcctattgactctgaggat---------cagttgggaaaacaaagagatctgtttaatgccgtggagaattctataac |
43645839 |
T |
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| Q |
101 |
caaattaggtgagacttttgtagtagttatatgtttgtagcaatttcttaaattttacttcannnnnnncttgttttattagccttatttgtgtcaatta |
200 |
Q |
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| T |
43645838 |
caaattaggtgagacttttgtagtagttatatgtttgtagcaatttcttaaattttacttcatttttttcttgttttattagccttatttgtgtcaatta |
43645739 |
T |
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| Q |
201 |
tcctgtttgcagagtatttcaacgtgcatttttcttcttc |
240 |
Q |
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| T |
43645738 |
tcctgtttgcagagtatttcaacgtgcattttttttcttc |
43645699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43614268 - 43614029
Alignment:
| Q |
1 |
tgttgatatccattatattaaatcccattgactccgaggatgagcactcacagttgggaaaacaaaaagatctgtttaatgccctggaaaattctataac |
100 |
Q |
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|||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||||| ||||| || | || ||||||||||| |||| |||||||||| |
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| T |
43614268 |
tgttgatatccattctattacatcccattgacactgagaatgagcactcacagttggaaaaacgaagatatttgtttaatgccgtggagaattctataat |
43614169 |
T |
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| Q |
101 |
caaattaggtgagacttttgtagtagttatatgtttgtagcaatttcttaaattttacttcannnnnnncttgttttattagccttatttgtgtcaatta |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||| ||| |||||| |||||||||| |
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| T |
43614168 |
gaaattaggtgagacttttgtagtaattatatgtttgtagcaattttttaaattgtacttcatttttttcttgttttactagacttattcgtgtcaatta |
43614069 |
T |
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| Q |
201 |
tcctgtttgcagagtatttcaacgtgcatttttcttcttc |
240 |
Q |
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||||||||||||| ||||||||| || |||||| |||||| |
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| T |
43614068 |
tcctgtttgcagaatatttcaacatgtattttttttcttc |
43614029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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