View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_5 (Length: 569)
Name: NF3640_low_5
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 40733525 - 40732985
Alignment:
| Q |
11 |
catcatcattctttaaactagctcttgagagttaaatccatgcttgtttaacatgataccaaaatcgaattaagaattgatagtgtggtaattagacaca |
110 |
Q |
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| T |
40733525 |
catcatcattctttaaactagctcttgagagttaaatccatgcttgtttaacatgataccagaatcgaattaagaattgatagtgtggtaattagacaca |
40733426 |
T |
|
| Q |
111 |
agaatcaggccgggcgtgaggatgtgtatagaagttgtattgaagttccacgttgacatgattatctgaatgatggatgtatacatgtactcacattctt |
210 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
40733425 |
agaatcaggctgggcgtgaggatgtgtatagaagttgtattgaagttccacgttgacatgattatctgaatgatgaatgtatatatgtacttacattctt |
40733326 |
T |
|
| Q |
211 |
attatttgagttaacttttgagagtgagatccaagtctacttaacactttaatcttttgaaccaagtttgttgttcaaatacgagcaaacaagcgttcag |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| | |
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| T |
40733325 |
attatttgagttaacttttgagagtgagattcaagtctacttaacactttaatcttttgaaccaagtttgttgttcaaatacgaaccaacaagaattcgg |
40733226 |
T |
|
| Q |
311 |
atgtagtagaagattatagtctctcacaacatggtgaattaattaaagctcacatttaataccaaacgttatcttcgaataaattatctcacattaagga |
410 |
Q |
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|||||| |||||||||||||||| |||||||| |||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
40733225 |
atgtagcggaagattatagtctcttacaacatgatgaactaattaaaactcacatttagtacctaacgttatcttcgaataaattatctcacattaagga |
40733126 |
T |
|
| Q |
411 |
tatctattgtagaccaaatagaagtttagtagacaagacttcaattaagcaaattttccaatcttccattatgattaacaagttagcaactttggctatg |
510 |
Q |
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| T |
40733125 |
tatctattgtagaccaaatagaagtttaggagacaagacttcaaataagcaaattttccaatcttccattatgattaacaagttagcaactttggctatg |
40733026 |
T |
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| Q |
511 |
aaatggaagtgctcgtattactcccatgtaactgacttatc |
551 |
Q |
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| T |
40733025 |
aaatggaagtgctcgtattactcccatgtaactgacttatc |
40732985 |
T |
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