View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_56 (Length: 244)
Name: NF3640_low_56
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 34055341 - 34055123
Alignment:
| Q |
18 |
caacaggcacgtgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattctatgatttggcttgacatgagtgaattta |
117 |
Q |
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| T |
34055341 |
caacaggcacatgtattgtttatctaccatctccggaccagcagttcttgtctattgttcatctaccattctatgatttggcttgacatgagtgaattta |
34055242 |
T |
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| Q |
118 |
tggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaactgactgaggcagtttggcgccgtcccta |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34055241 |
tggaacgaagcacagtctccaaactcatcggctcacttcatgcatatgctggttataccaagggtggtcaactgactgaggaagtttggcgccgtcccta |
34055142 |
T |
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| Q |
218 |
cactgttgtaccctttgat |
236 |
Q |
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||||||||||||||||||| |
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| T |
34055141 |
cactgttgtaccctttgat |
34055123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 47382691 - 47382837
Alignment:
| Q |
90 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
189 |
Q |
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| T |
47382691 |
atgattcggcttgacatgagcgaatttatggaacggcacacagtctccaaactcatcggttcacctcctggatatgttggttataccgagggtggtcaat |
47382790 |
T |
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| Q |
190 |
tgactgaggcagtttggcgccgtccctacactgttgtaccctttgat |
236 |
Q |
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| T |
47382791 |
tgactgaggcagttcggcgccgtccctatactgttgtactctttgat |
47382837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 45115640 - 45115786
Alignment:
| Q |
90 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
189 |
Q |
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|||||| | |||||||||||||| ||||||||| | ||| ||||||||||| || ||||||| || || ||||| |||||| ||| | |||||||| |
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| T |
45115640 |
atgattcgtcttgacatgagtgagtttatggaaaggcacactgtctccaaacttattggttcacctcctggatatgttggttacaccgaaggtggtcagt |
45115739 |
T |
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| Q |
190 |
tgactgaggcagtttggcgccgtccctacactgttgtaccctttgat |
236 |
Q |
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||||||| |||||| | || ||||| ||||||||||||| ||||||| |
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| T |
45115740 |
tgactgaagcagttcgtcgtcgtccttacactgttgtactctttgat |
45115786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 40245405 - 40245551
Alignment:
| Q |
90 |
atgatttggcttgacatgagtgaatttatggaacgaagcacagtctccaaactcatcggttcacttcatgcatatgctggttataccaagggtggtcaac |
189 |
Q |
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|||||| | ||||||||||||||||| |||||| | |||||||||||||||||| ||||||| || | ||||| ||||||||| |||||||||||| |
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| T |
40245405 |
atgattcgtcttgacatgagtgaattcatggaaaggcacacagtctccaaactcattggttcacctccaggatatgttggttatactgagggtggtcaac |
40245504 |
T |
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| Q |
190 |
tgactgaggcagtttggcgccgtccctacactgttgtaccctttgat |
236 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||| ||||||| |
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| T |
40245505 |
tgactgaggcagttcggcgtcgtccctacacggttgtactctttgat |
40245551 |
T |
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