View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_6 (Length: 540)
Name: NF3640_low_6
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 255 - 540
Target Start/End: Complemental strand, 2133180 - 2132894
Alignment:
| Q |
255 |
tgatggcggtgggtttgaaaa-gctaaagttttgtgctttgtttagtccttgataaaattttttggaaaaggtaaagttttgtaatttgatgtaattcta |
353 |
Q |
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| T |
2133180 |
tgatggcggtgggtttgaaaaagctaaagttttgtgcttagtttagtccttgataaaaaaatttggaaaaggtgaagttttgtaatttgatgtaattttt |
2133081 |
T |
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| Q |
354 |
ggggcacgacctgtttagaattgttgacagatccaaatattgcttttgagctttctgtcatgtctaatttaactcttaaaaatttgccttttcatgttaa |
453 |
Q |
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| T |
2133080 |
ggggcacggcttgtttagaattgttgacagatccaaatattgcttttgagctttctgtcatgtctaatttaactcttaaaaatttgccttttcatgttaa |
2132981 |
T |
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| Q |
454 |
ttctgttcagtaaattgtttatgagacattttgcttatctgtttaataatttagctctacatattttatgcaactctgcagatagac |
540 |
Q |
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| T |
2132980 |
ttctgttcagtaaattgtttatgagacattttgcttatctgtttaataatttaactctacatattttatgtaactctgcaggtagac |
2132894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 2133424 - 2133312
Alignment:
| Q |
13 |
gtttcaaaactgtcatcgttgataatcttgataattcctctgaagttgctgttcgtagagttaaggaactcgctgctgaatttgggaaaaacctcaattt |
112 |
Q |
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| T |
2133424 |
gtttcaaaactgtcatcgttgataatcttgataattcctctgaagttgctgttcgtagagttaaggaactcgctgctgaatttgggaaaaacctcaattt |
2133325 |
T |
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| Q |
113 |
tcacaaggtgctc |
125 |
Q |
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| T |
2133324 |
tcacaaggtgctc |
2133312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 2129150 - 2129053
Alignment:
| Q |
28 |
tcgttgataatcttgataattcctctgaagttgctgttcgtagagttaaggaactcgctgctgaatttgggaaaaacctcaattttcacaaggtgctc |
125 |
Q |
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| T |
2129150 |
tcgttgataatcttgataattcctcagaagttgccattcacagagttaaggaactcgccggtgaatttgggaataacctcagctttcacaaggtgctc |
2129053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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