View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_low_60 (Length: 238)

Name: NF3640_low_60
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_low_60
NF3640_low_60
[»] chr3 (17 HSPs)
chr3 (1-222)||(3650347-3650566)
chr3 (147-183)||(21259152-21259188)
chr3 (144-208)||(52202021-52202085)
chr3 (146-213)||(7441633-7441700)
chr3 (144-206)||(4618192-4618254)
chr3 (147-183)||(7160235-7160271)
chr3 (147-183)||(16908650-16908686)
chr3 (147-222)||(25894699-25894775)
chr3 (147-183)||(27742663-27742699)
chr3 (147-183)||(27742777-27742813)
chr3 (147-183)||(29125875-29125911)
chr3 (144-208)||(29126099-29126163)
chr3 (147-183)||(32270750-32270786)
chr3 (147-183)||(35084084-35084120)
chr3 (147-183)||(44254432-44254468)
chr3 (147-183)||(49657043-49657079)
chr3 (147-183)||(52202273-52202309)
[»] chr4 (25 HSPs)
chr4 (143-213)||(50376331-50376401)
chr4 (143-208)||(9024133-9024198)
chr4 (144-205)||(54795784-54795845)
chr4 (147-208)||(32151097-32151158)
chr4 (1-61)||(50376192-50376251)
chr4 (149-200)||(18707724-18707775)
chr4 (147-201)||(11975782-11975835)
chr4 (141-208)||(15632169-15632238)
chr4 (149-207)||(18735220-18735278)
chr4 (147-205)||(41832418-41832476)
chr4 (144-201)||(9046136-9046193)
chr4 (144-201)||(44745645-44745702)
chr4 (147-212)||(50767069-50767134)
chr4 (144-208)||(6755868-6755932)
chr4 (147-183)||(12700399-12700435)
chr4 (144-208)||(13613147-13613211)
chr4 (149-201)||(18668975-18669027)
chr4 (149-205)||(18714822-18714878)
chr4 (144-200)||(27270400-27270456)
chr4 (147-183)||(31581581-31581617)
chr4 (147-183)||(31663998-31664034)
chr4 (147-183)||(36584714-36584750)
chr4 (147-183)||(43564709-43564745)
chr4 (147-183)||(44134784-44134820)
chr4 (147-183)||(52581748-52581784)
[»] chr5 (23 HSPs)
chr5 (141-213)||(42141015-42141086)
chr5 (145-212)||(30772914-30772981)
chr5 (143-213)||(26683141-26683211)
chr5 (144-208)||(26297063-26297127)
chr5 (145-208)||(13013310-13013373)
chr5 (5-56)||(42141165-42141216)
chr5 (144-208)||(9737761-9737825)
chr5 (144-204)||(20487015-20487075)
chr5 (145-205)||(20656913-20656973)
chr5 (149-201)||(26683033-26683085)
chr5 (146-202)||(17701216-17701273)
chr5 (147-208)||(37042611-37042672)
chr5 (144-208)||(3631298-3631362)
chr5 (147-183)||(7440311-7440347)
chr5 (147-183)||(9737651-9737687)
chr5 (145-201)||(13084698-13084754)
chr5 (144-208)||(15374154-15374218)
chr5 (147-183)||(15374391-15374427)
chr5 (147-183)||(16823422-16823458)
chr5 (147-183)||(26525060-26525096)
chr5 (144-208)||(41084636-41084700)
chr5 (21-61)||(41700807-41700847)
chr5 (147-183)||(43348925-43348961)
[»] chr1 (15 HSPs)
chr1 (149-212)||(1243675-1243738)
chr1 (147-201)||(45807058-45807112)
chr1 (145-208)||(6849792-6849855)
chr1 (144-213)||(51139720-51139789)
chr1 (144-208)||(8530122-8530186)
chr1 (147-183)||(48708247-48708283)
chr1 (145-208)||(29169981-29170044)
chr1 (145-207)||(27324588-27324649)
chr1 (156-201)||(9042484-9042529)
chr1 (147-208)||(17285351-17285412)
chr1 (147-200)||(17879918-17879971)
chr1 (147-183)||(25298918-25298954)
chr1 (147-183)||(40567257-40567293)
chr1 (147-183)||(44052289-44052325)
chr1 (147-183)||(47562018-47562054)
[»] chr6 (17 HSPs)
chr6 (147-205)||(18234955-18235013)
chr6 (144-208)||(13405418-13405482)
chr6 (144-201)||(7021864-7021921)
chr6 (143-191)||(2417687-2417735)
chr6 (145-208)||(8560465-8560528)
chr6 (144-203)||(12698539-12698598)
chr6 (147-202)||(32330056-32330111)
chr6 (144-201)||(15469136-15469193)
chr6 (144-201)||(26468495-26468552)
chr6 (147-203)||(2044914-2044970)
chr6 (147-191)||(2399249-2399293)
chr6 (147-183)||(7022108-7022144)
chr6 (145-201)||(9079111-9079167)
chr6 (147-183)||(11450336-11450372)
chr6 (145-201)||(24635526-24635582)
chr6 (147-183)||(34127675-34127711)
chr6 (147-183)||(34127789-34127825)
[»] chr2 (26 HSPs)
chr2 (147-205)||(1538195-1538253)
chr2 (146-200)||(44788476-44788530)
chr2 (144-201)||(1021123-1021180)
chr2 (144-201)||(1115093-1115150)
chr2 (144-213)||(26293194-26293263)
chr2 (144-208)||(2249620-2249684)
chr2 (144-208)||(43471509-43471573)
chr2 (144-201)||(11764840-11764897)
chr2 (144-205)||(11935431-11935492)
chr2 (141-178)||(30909374-30909411)
chr2 (143-208)||(40897715-40897780)
chr2 (147-183)||(1020899-1020935)
chr2 (147-183)||(2249872-2249908)
chr2 (147-183)||(11765085-11765121)
chr2 (145-201)||(12995012-12995068)
chr2 (147-183)||(13615794-13615830)
chr2 (144-208)||(13616018-13616082)
chr2 (147-183)||(16194543-16194579)
chr2 (144-208)||(22674795-22674859)
chr2 (147-183)||(26860493-26860529)
chr2 (144-200)||(28745547-28745603)
chr2 (147-183)||(31392837-31392873)
chr2 (147-183)||(34983567-34983603)
chr2 (147-183)||(36436013-36436049)
chr2 (147-183)||(41699359-41699395)
chr2 (147-183)||(44545560-44545596)
[»] chr8 (19 HSPs)
chr8 (144-213)||(43117383-43117452)
chr8 (147-213)||(4698070-4698134)
chr8 (144-214)||(4697840-4697910)
chr8 (144-205)||(41388048-41388109)
chr8 (144-208)||(6316916-6316980)
chr8 (147-213)||(3659654-3659718)
chr8 (147-208)||(34934316-34934375)
chr8 (144-201)||(2317108-2317165)
chr8 (144-209)||(3886836-3886901)
chr8 (144-200)||(17836474-17836531)
chr8 (147-183)||(1184000-1184036)
chr8 (147-183)||(4231511-4231547)
chr8 (147-183)||(7242467-7242503)
chr8 (147-183)||(8996525-8996561)
chr8 (147-183)||(10092546-10092582)
chr8 (147-183)||(21435131-21435167)
chr8 (147-183)||(22658178-22658214)
chr8 (147-183)||(36060649-36060685)
chr8 (147-183)||(38567399-38567435)
[»] chr7 (16 HSPs)
chr7 (144-208)||(26873742-26873806)
chr7 (147-183)||(23469227-23469263)
chr7 (147-183)||(36675318-36675354)
chr7 (145-209)||(41367698-41367761)
chr7 (147-201)||(25303949-25304003)
chr7 (147-184)||(9013992-9014029)
chr7 (147-184)||(16834106-16834143)
chr7 (144-201)||(31428783-31428840)
chr7 (144-205)||(36675542-36675603)
chr7 (147-183)||(17167158-17167194)
chr7 (144-208)||(22723831-22723895)
chr7 (144-208)||(29502187-29502251)
chr7 (147-183)||(29663092-29663128)
chr7 (147-183)||(40055882-40055918)
chr7 (147-183)||(44143052-44143088)
chr7 (144-208)||(46027719-46027783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (147-183)||(65339-65375)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3650566 - 3650347
Alignment:
Q  1 aaaccacttttggaaccgccgaaatctaaaattgttgaacaatctcacaaaatggacctatactttttaccnnnnnnn--ctttctaggtggaccactac 98  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||         ||||||| |||| |||| ||    
T  3650566 aaaccacttttggaaccgccgaaatctaaaactgttgaaaaatctcacaaaatagacctatactttttacctttttttttctttctatgtgggccac-ac 3650468  T
Q  99 accattttacgggaatttgaatgtaccnnnnnnnnnnnnnnncgtcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaatt 198  Q
    ||||||||||||| ||||| |||| ||                ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3650467 accattttacggggatttggatgtgccgaaaataaaaatt---gtcacaaaattgtttaaaatcttacaaattagacctataattattaatttattaatt 3650371  T
Q  199 ttttcgggtgagccatgcatgaag 222  Q
    |||| || || |||| ||||||||    
T  3650370 tttttggatgggccacgcatgaag 3650347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 21259152 - 21259188
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21259152 aaaattgtttaaagtcttgcaaattagacctataatt 21259188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 52202085 - 52202021
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||| |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  52202085 cacaaaattgtataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 52202021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 7441633 - 7441700
Alignment:
Q  146 caaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    |||||||||||||||||||||||| |||||||||  |  || |||| ||||||||||| |||| ||||    
T  7441633 caaaattgtttaaaatcttgcaaagtagacctatggtcgttgattttttaattttttcaggtgggcca 7441700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 4618254 - 4618192
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcggg 206  Q
    ||||||||||| |||||||||||||| |||| |||||||  || |||| ||||||||| ||||    
T  4618254 cacaaaattgtataaaatcttgcaaaatagatctataatcgttgattttttaatttttccggg 4618192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 7160235 - 7160271
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  7160235 aaaattgtttaaagtctcgcaaattagacctataatt 7160271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 16908650 - 16908686
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  16908650 aaaattgtttaaagtctagcaaattagacctataatt 16908686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 25894699 - 25894775
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaa-tttattaattttttcgggtgagccatgcatgaag 222  Q
    ||||||||||||||||| ||||| |||||||||| |  | || ||| ||||||||| |||||| |||| ||||||||    
T  25894699 aaaattgtttaaaatctcgcaaaatagacctatagtcgtaaatttttttaatttttccgggtgggccacgcatgaag 25894775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 27742699 - 27742663
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27742699 aaaattgtataaaatcttgcaaaatagacctataatt 27742663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 27742813 - 27742777
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  27742813 aaaattgtttaaagtctcgcaaattagacctataatt 27742777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 29125875 - 29125911
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  29125875 aaaattgtttaaagtctcgcaaattagacctataatt 29125911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 29126099 - 29126163
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  29126099 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 29126163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 32270750 - 32270786
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  32270750 aaaattgtttaaagtctcgcaaattagacctataatt 32270786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 35084120 - 35084084
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  35084120 aaaattgtttaaagtctcgcaaattagacctataatt 35084084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 44254432 - 44254468
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  44254432 aaaattgtttaaagtctcgcaaattagacctataatt 44254468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 49657043 - 49657079
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  49657043 aaaattgtttaaagtctcgcaaattagacctataatt 49657079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 52202309 - 52202273
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  52202309 aaaattgtttaaagtctcgcaaattagacctataatt 52202273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 50376331 - 50376401
Alignment:
Q  143 tcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||| |||| ||||    
T  50376331 tcacaaaattgtttaaaatcttgcaaattagacccataattattaatattttcattttttcaggtgggcca 50376401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 9024198 - 9024133
Alignment:
Q  143 tcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||||| |||||||||  ||||| |||| ||||||| |||||||| ||||||||||||||||    
T  9024198 tcacaaaattttttaaaatcccgcaaagtagatctataatcattaattttttaattttttcgggtg 9024133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 54795784 - 54795845
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||| |||||||||||||| ||||||||||||  || |||| |||||||||||||    
T  54795784 cacaaaattgtataaaatcttgcaaaatagacctataatcgttgattttttaattttttcgg 54795845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 32151158 - 32151097
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||||||||| ||| | || | |||||||| ||||||| ||||||||||||||||    
T  32151158 aaaattgtttaaaatctagcataataaatctataattgttaattttttaattttttcgggtg 32151097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 50376192 - 50376251
Alignment:
Q  1 aaaccacttttggaaccgccgaaatctaaaattgttgaacaatctcacaaaatggacctat 61  Q
    |||||||||||| ||  |||||||||||||| ||||||| |||||||| ||||||||||||    
T  50376192 aaaccacttttgaaattgccgaaatctaaaactgttgaaaaatctcac-aaatggacctat 50376251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 18707775 - 18707724
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaatttt 200  Q
    |||||| |||||||||||||| ||||||||||||  ||||||| ||||||||    
T  18707775 aattgtataaaatcttgcaaagtagacctataatcgttaattttttaatttt 18707724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 11975782 - 11975835
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||||||||| ||| | ||||||||||||| ||||||| |||||||||    
T  11975782 aaaattgtttaaaatctcgcagaatagacctataattgttaattt-ttaattttt 11975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 15632238 - 15632169
Alignment:
Q  141 cgtcacaaaattgtttaaaatcttgcaaattagacctataattattaa--tttattaattttttcgggtg 208  Q
    |||| |||||||||||||||||| | ||| |||||||| |||| ||||  |||||| |||||||||||||    
T  15632238 cgtcgcaaaattgtttaaaatctcgtaaaatagacctacaattgttaaattttatttattttttcgggtg 15632169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 18735278 - 18735220
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggt 207  Q
    |||||| |||||||| ||||| ||||||||||||  ||||||| ||||||||| |||||    
T  18735278 aattgtataaaatctcgcaaaatagacctataatcgttaattttttaatttttccgggt 18735220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 41832476 - 41832418
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    |||||||  |||||||||||||| ||||| ||||||  ||||||| |||||||||||||    
T  41832476 aaaattgcataaaatcttgcaaaatagacatataatcgttaattttttaattttttcgg 41832418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 9046136 - 9046193
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||| |||||||| ||||| |||| |||||||  ||||||| |||||||||    
T  9046136 cacaaaattgtataaaatctcgcaaaatagatctataatcgttaattttttaattttt 9046193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 44745645 - 44745702
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||  |||||||||||||| ||||||||||||  || |||| |||||||||    
T  44745645 cacaaaattgcataaaatcttgcaaaatagacctataatcgttgattttttaattttt 44745702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 50767134 - 50767069
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcc 212  Q
    |||||||| |||||||| ||||| ||||||||||||  || |||| ||||||||| ||| ||||||    
T  50767134 aaaattgtataaaatctcgcaaaatagacctataatcgttgattttttaatttttccggatgagcc 50767069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 6755932 - 6755868
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  6755932 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 6755868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 12700399 - 12700435
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  12700399 aaaattgtttaaagtctcgcaaattagacctataatt 12700435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 13613147 - 13613211
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  13613147 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 13613211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 18669027 - 18668975
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||| |||||||| ||||| ||||||||||||  ||||||| |||||||||    
T  18669027 aattgtataaaatctcgcaaagtagacctataatcgttaattttttaattttt 18668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 18714878 - 18714822
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    |||||| |||||||| ||||| ||||||||||||  ||||||| | |||||||||||    
T  18714878 aattgtataaaatctcgcaaagtagacctataatcgttaatttttaaattttttcgg 18714822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 27270456 - 27270400
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaatttt 200  Q
    ||||||||||| |||||||| ||||| ||||| |||||| ||| |||| ||||||||    
T  27270456 cacaaaattgtataaaatctcgcaaaatagacttataatcattgattttttaatttt 27270400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 31581581 - 31581617
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  31581581 aaaattgtttaaagtctcgcaaattagacctataatt 31581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 31663998 - 31664034
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  31663998 aaaattgtttaaagtctcgcaaattagacctataatt 31664034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 36584750 - 36584714
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  36584750 aaaattgtttaaagtctcgcaaattagacctataatt 36584714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 43564745 - 43564709
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  43564745 aaaattgtttaaactctcgcaaattagacctataatt 43564709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 44134820 - 44134784
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  44134820 aaaattgtttaaagtctcgcaaattagacctataatt 44134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 52581784 - 52581748
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  52581784 aaaattgtttaaagtctcgcaaattagacctataatt 52581748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 42141086 - 42141015
Alignment:
Q  141 cgtcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  42141086 cgtcataaaattgtttaaa-tcatgcaaattagacctataattattaattttttaattttttctggtgggcca 42141015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 30772981 - 30772914
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcc 212  Q
    |||||||||  |||||||||||||| ||||||||||||  || |||| ||||||||||||||||||||    
T  30772981 acaaaattgcataaaatcttgcaaaatagacctataatcgttgattttttaattttttcgggtgagcc 30772914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 26683141 - 26683211
Alignment:
Q  143 tcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    |||||||||||||||||||||  |||| || |||||||||| ||||||| ||||||||| |||||| ||||    
T  26683141 tcacaaaattgtttaaaatctcacaaaataaacctataattgttaattttttaatttttccgggtgggcca 26683211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 26297063 - 26297127
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||| | ||| |||||||||| ||||||||||||| || |||| ||||||||||||||||    
T  26297063 cacaaaattatataagatcttgcaaaatagacctataattgttgattttttaattttttcgggtg 26297127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 13013310 - 13013373
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||| ||||||||| ||||||||||||||||||  || |||| ||||||||| ||||||    
T  13013310 acaaaattgcttaaaatctcgcaaattagacctataatcgttgattttttaatttttccgggtg 13013373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 42141216 - 42141165
Alignment:
Q  5 cacttttggaaccgccgaaatctaaaattgttgaacaatctcacaaaatgga 56  Q
    |||||||| |||||||||||||||| ||||||||| |||| |||||||||||    
T  42141216 cacttttgaaaccgccgaaatctaacattgttgaaaaatcacacaaaatgga 42141165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 9737761 - 9737825
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  ||||||| ||||||||| ||||||    
T  9737761 cacaaaattgcataaaatctcgcaaaatagacctataatcgttaattttttaatttttccgggtg 9737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 20487075 - 20487015
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcg 204  Q
    ||||||||||| |||||||||||||| || |||||| ||  ||||||| ||||||||||||    
T  20487075 cacaaaattgtataaaatcttgcaaaatatacctatgatcgttaattttttaattttttcg 20487015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 20656913 - 20656973
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    |||||||||  |||||||| | ||||||||||||||||| || |||| |||||||||||||    
T  20656913 acaaaattgcataaaatctcgtaaattagacctataattgttgattttttaattttttcgg 20656973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 26683033 - 26683085
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||||||||  |||| ||||||||||||| ||||||| |||||||||    
T  26683033 aattgtttaaaatctcacaaaatagacctataatttttaattttttaattttt 26683085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 17701273 - 17701216
Alignment:
Q  146 caaaattgtttaaaatcttgc-aaattagacctataattattaatttattaatttttt 202  Q
    ||||||||||||||||||||| ||| ||||| | | ||| ||||||||||||||||||    
T  17701273 caaaattgtttaaaatcttgcaaaaatagacatgtgattgttaatttattaatttttt 17701216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 37042611 - 37042672
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||| |||||||| ||||| |||| |||| || || ||||| ||||||||||||||||    
T  37042611 aaaattgtataaaatctcgcaaaatagatctatgatcatcaattttttaattttttcgggtg 37042672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 3631362 - 3631298
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  3631362 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 3631298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 7440311 - 7440347
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  7440311 aaaattgtttaaagtctcgcaaattagacctataatt 7440347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 9737651 - 9737687
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  9737651 aaaattgtttaaagtctcgcaaattagacctataatt 9737687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 13084698 - 13084754
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||  |||||||| ||||||||||||||||||  || |||| |||||||||    
T  13084698 acaaaattgcataaaatctcgcaaattagacctataatcgttgattttttaattttt 13084754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 15374218 - 15374154
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  15374218 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 15374154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 15374427 - 15374391
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  15374427 aaaattgtttaaagtctcgcaaattagacctataatt 15374391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 16823458 - 16823422
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  16823458 aaaattgtttaaagtctcgcaaattagacctataatt 16823422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26525060 - 26525096
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26525060 aaaattgtttaaagtctcgcaaattagacctataatt 26525096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 41084636 - 41084700
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||| | |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  41084636 cacaaaattctataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 41084700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 41700847 - 41700807
Alignment:
Q  21 gaaatctaaaattgttgaacaatctcacaaaatggacctat 61  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  41700847 gaaatctagaactgttgaaaaatctcacaaaatggacctat 41700807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 43348961 - 43348925
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  43348961 aaaattgtttaaagtctcgcaaattagacctataatt 43348925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 1243675 - 1243738
Alignment:
Q  149 aattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcc 212  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||| ||||||||||    
T  1243675 aattgtttaaaatctcgcaaaatagacctataattgttaattttttaatttttccgggtgagcc 1243738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 45807112 - 45807058
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||    
T  45807112 aaaattgtttaaaatctcgcaaaatagacctataattgttaattttttaattttt 45807058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 6849855 - 6849792
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||||| |||||||| ||||||||||||||||||  || |||| ||||||||| ||||||    
T  6849855 acaaaattgtataaaatctcgcaaattagacctataatcgttgattttttaatttttccgggtg 6849792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 51139789 - 51139720
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||||||||| |||||||| ||||| ||||||||||||  || |||| |||||||||| ||||| ||||    
T  51139789 cacaaaattgtataaaatctcgcaaaatagacctataatcgttgattttttaattttttggggtgggcca 51139720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 8530186 - 8530122
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  8530186 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaattttttcgggtg 8530122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 48708247 - 48708283
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| |||||||||||||||||||||||    
T  48708247 aaaattgtttaaagtcttgcaaattagacctataatt 48708283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 29170044 - 29169981
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||||  |||||||| ||||||||||||||||||  || |||| ||||||||| ||||||    
T  29170044 acaaaattgcataaaatctcgcaaattagacctataatcgttgattttttaatttttccgggtg 29169981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 27324649 - 27324588
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggt 207  Q
    ||||||||||||||||||| | ||| |||||||| | |||||||||| |||||||||| ||||    
T  27324649 acaaaattgtttaaaatctcgtaaaatagacctacagttattaattt-ttaattttttagggt 27324588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 9042484 - 9042529
Alignment:
Q  156 taaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||| | |||||||||||||||||||| |||| |||||||||    
T  9042484 taaaatctcgtaaattagacctataattattgattttttaattttt 9042529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 17285351 - 17285412
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||  |||||||| ||||||||||||||||||  || |||| ||||||||| ||||||    
T  17285351 aaaattgcataaaatctcgcaaattagacctataatcgttgattttttaatttttccgggtg 17285412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 17879918 - 17879971
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaatttt 200  Q
    ||||||||||||||||| ||||| || || |||||||||||| || ||||||||    
T  17879918 aaaattgtttaaaatctcgcaaaataaacatataattattaaatttttaatttt 17879971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 25298918 - 25298954
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  25298918 aaaattgtttaaagtctcgcaaattagacctataatt 25298954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 40567293 - 40567257
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  40567293 aaaattgtttaaagtctcgcaaattagacctataatt 40567257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 44052289 - 44052325
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  44052289 aaaattgtttaaagtctcgcaaattagacctataatt 44052325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 47562054 - 47562018
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  47562054 aaaattgtttaaagtctcgcaaattagacctataatt 47562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 18235013 - 18234955
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||||    
T  18235013 aaaattgtttaaaatctcgcaaaatatacctataattattaattttttaattttttcgg 18234955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 13405418 - 13405482
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||| |||||||| ||||| ||||||||||||  ||||||| ||||||||||||||||    
T  13405418 cacaaaattgtataaaatctcgcaaaatagacctataatcgttaattttttaattttttcgggtg 13405482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7021921 - 7021864
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||  |||||||| ||||| |||||||||||| |||||||| |||||||||    
T  7021921 cacaaaattgcataaaatctcgcaaaatagacctataatcattaattttttaattttt 7021864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 2417687 - 2417735
Alignment:
Q  143 tcacaaaattgtttaaaatcttgcaaattagacctataattattaattt 191  Q
    |||||||||||||| |||||||||||| || | ||||||||||||||||    
T  2417687 tcacaaaattgtttgaaatcttgcaaaataaatctataattattaattt 2417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 8560528 - 8560465
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    |||||||||  |||||||| |||| |||||||||||||  || |||| ||||||||||||||||    
T  8560528 acaaaattgcataaaatctcgcaatttagacctataatcgttgattttttaattttttcgggtg 8560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 12698598 - 12698539
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttc 203  Q
    ||||||||||| |||||||| ||||| ||||||||||||| || |||| |||| ||||||    
T  12698598 cacaaaattgtataaaatctcgcaaaatagacctataattgttgattttttaaatttttc 12698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 32330056 - 32330111
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaatttttt 202  Q
    ||||||||||||||| ||||| | |||| |||||||| ||||||| ||||||||||    
T  32330056 aaaattgtttaaaattttgcagaatagatctataattgttaattttttaatttttt 32330111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 15469193 - 15469136
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||  |||||||||||||| ||||||||||||  || |||| |||||||||    
T  15469193 cacaaaattgcataaaatcttgcaaaatagacctataatcgttgattttttaattttt 15469136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 26468552 - 26468495
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||| |||||||| ||||| ||||||||||||  || |||| |||||||||    
T  26468552 cacaaaattgtataaaatctcgcaaaatagacctataatagttgattttttaattttt 26468495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 2044970 - 2044914
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttc 203  Q
    ||||||||||||||||| ||| | || || ||||||| ||||||| |||||||||||    
T  2044970 aaaattgtttaaaatctcgcataatatacatataattgttaattttttaattttttc 2044914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 2399249 - 2399293
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaattt 191  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||    
T  2399249 aaaattgtttaaaatcttacaaaattgacctataatttttaattt 2399293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 7022144 - 7022108
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  7022144 aaaattgtttaaagtctcgcaaattagacctataatt 7022108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 9079111 - 9079167
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||  |||||||| ||||||||||||||||||  || |||| |||||||||    
T  9079111 acaaaattgcataaaatctcgcaaattagacctataatcgttgattttttaattttt 9079167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 11450336 - 11450372
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  11450336 aaaattgtttaaagtctcgcaaattagacctataatt 11450372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 24635526 - 24635582
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||  |||||||| ||||||||||||||||||  || |||| |||||||||    
T  24635526 acaaaattgcataaaatctcgcaaattagacctataatcgttgattttttaattttt 24635582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 34127711 - 34127675
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    |||||||| |||||||||||||| |||||||||||||    
T  34127711 aaaattgtataaaatcttgcaaaatagacctataatt 34127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 34127825 - 34127789
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  34127825 aaaattgtttaaagtctcgcaaattagacctataatt 34127789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 1538195 - 1538253
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||||||||| ||| | ||||||||||||| ||||||| |||||||||||||    
T  1538195 aaaattgtttaaaatctcgcataatagacctataattgttaattttttaattttttcgg 1538253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 44788476 - 44788530
Alignment:
Q  146 caaaattgtttaaaatcttgcaaattagacctataattattaatttattaatttt 200  Q
    |||||||||||||||||| | ||| ||||||||||||| ||||||| ||||||||    
T  44788476 caaaattgtttaaaatctcgaaaaatagacctataattgttaattttttaatttt 44788530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 1021123 - 1021180
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||| |||||||| ||||| |||||||||||| ||| |||| |||||||||    
T  1021123 cacaaaattgtataaaatctcgcaaaatagacctataataattgattttttaattttt 1021180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 1115093 - 1115150
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||| |||||||| ||||| |||||||||||| ||| |||| |||||||||    
T  1115093 cacaaaattgtataaaatctcgcaaaatagacctataataattgattttttaattttt 1115150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 26293263 - 26293194
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||||||||  |||||||| ||||| ||||||||||||  ||||||| ||||||||| |||||| ||||    
T  26293263 cacaaaattgcataaaatctcgcaaaatagacctataatcgttaattttttaatttttccgggtgggcca 26293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 2249684 - 2249620
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| |||| ||||||| ||| |||| ||||||||||||||||    
T  2249684 cacaaaattgcataaaatctcgcaaaatagatctataatcattgattttttaattttttcgggtg 2249620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 43471509 - 43471573
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||| |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  43471509 cacaaaattgtataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 43471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 11764897 - 11764840
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||| |||| |||||||||||||| ||||||||||||  || |||| |||||||||    
T  11764897 cacaaagttgtataaaatcttgcaaaatagacctataatcgttgattttttaattttt 11764840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 11935431 - 11935492
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||| |||||||| ||||| ||||| ||||||  ||||||| | |||||||||||    
T  11935431 cacaaaattgtataaaatctcgcaaaatagacttataatcgttaatttttaaattttttcgg 11935492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 30909374 - 30909411
Alignment:
Q  141 cgtcacaaaattgtttaaaatcttgcaaattagaccta 178  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  30909374 cgtcgcaaaattgtttaaaatcttgcaaagtagaccta 30909411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 40897715 - 40897780
Alignment:
Q  143 tcacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||||||||||||| || || || |||||||||   |||||| || |||||||||||||    
T  40897715 tcacaaaattgtttaaaatctcgcgaaataaacctataatcgctaatttttttattttttcgggtg 40897780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 1020899 - 1020935
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  1020899 aaaattgtttaaagtctcgcaaattagacctataatt 1020935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 2249908 - 2249872
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  2249908 aaaattgtttaaagtctcgcaaattagacctataatt 2249872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 11765121 - 11765085
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  11765121 aaaattgtttaaagtctcgcaaattagacctataatt 11765085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 12995068 - 12995012
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||  |||||||| ||||||||||||||||||  || |||| |||||||||    
T  12995068 acaaaattgcataaaatctcgcaaattagacctataatcgttgattttttaattttt 12995012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 13615794 - 13615830
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||||||| || ||||||||||||||||    
T  13615794 aaaattgtttaaaatctcgcgaattagacctataatt 13615830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 13616018 - 13616082
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  13616018 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 13616082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 16194579 - 16194543
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  16194579 aaaattgtttaaagtcttgcaaattagacctttaatt 16194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 22674795 - 22674859
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  22674795 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 22674859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 26860493 - 26860529
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  26860493 aaaattgtttaaagtctcgcaaattagacctataatt 26860529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 28745547 - 28745603
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaatttt 200  Q
    ||||||||||  |||||||| ||||| ||||||||||||  ||||||| ||||||||    
T  28745547 cacaaaattgcataaaatctcgcaaaatagacctataatcgttaattttttaatttt 28745603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 31392873 - 31392837
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  31392873 aaaattgtttaaagtctcgcaaattagacctataatt 31392837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 34983603 - 34983567
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  34983603 aaaattgtttaaagtctcgcaaattagacctataatt 34983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 36436013 - 36436049
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  36436013 aaaattgtttaaagtctcgcaaattagacctataatt 36436049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 41699395 - 41699359
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  41699395 aaaattgtttaaagtctcgcaaattagacctataatt 41699359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 44545560 - 44545596
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  44545560 aaaattgtttaaagtctcgcaaattagacctataatt 44545596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 43117452 - 43117383
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||||||||| |||||||| ||||| ||||||||||||| || |||| ||||||||| |||||| ||||    
T  43117452 cacaaaattgtataaaatctcgcaaaatagacctataattgttgattttttaatttttccgggtgggcca 43117383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 4698134 - 4698070
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||||||||||| ||||||||||||||||||||||  | ||||  |||| ||||||||||||||||    
T  4698134 aaaattgtttaaagtcttgcaaattagacctataat--tgaattatttaaatttttcgggtgagcca 4698070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 4697910 - 4697840
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagccat 214  Q
    ||||||||||  |||||||||| ||| || ||||||||||||| |||| ||||||||||||| || |||||    
T  4697910 cacaaaattgcataaaatcttgtaaagtaaacctataattattgattttttaattttttcggatgggccat 4697840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 41388109 - 41388048
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||| |||||||||||||| || |||||||||  || |||| |||||||||||||    
T  41388109 cacaaaattgtataaaatcttgcaaaataaacctataatagttgattttttaattttttcgg 41388048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 6316980 - 6316916
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  ||||||||  |||| ||||||||||||| || |||| ||||||||||||||||    
T  6316980 cacaaaattgcataaaatctcacaaaatagacctataattgttgattttttaattttttcgggtg 6316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 3659654 - 3659718
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtgagcca 213  Q
    ||||||||||||| ||| ||||||||||||||||||  | ||||  |||| ||||||||||||||||    
T  3659654 aaaattgtttaaagtctcgcaaattagacctataat--tgaattatttaaatttttcgggtgagcca 3659718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 34934316 - 34934375
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||||  |||| |||||||||||    
T  34934316 aaaattgtttaaagtctcgcaaattagacctataatta--aattatttaaatttttcgggtg 34934375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 2317165 - 2317108
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||| |||||||| ||||| ||||||||||||  || |||| |||||||||    
T  2317165 cacaaaattgtataaaatctcgcaaaatagacctataatcgttgattttttaattttt 2317108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 3886836 - 3886901
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtga 209  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| |||||||    
T  3886836 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtga 3886901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 17836531 - 17836474
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacct-ataattattaatttattaatttt 200  Q
    ||||||||||| ||||||||| |||| || |||| |||||||||||||| ||||||||    
T  17836531 cacaaaattgtataaaatcttacaaaatacaccttataattattaattttttaatttt 17836474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 1184036 - 1184000
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    |||||||| |||||||| |||||||||||||||||||    
T  1184036 aaaattgtataaaatctcgcaaattagacctataatt 1184000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 4231547 - 4231511
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  4231547 aaaattgtttaaagtctcgcaaattagacctataatt 4231511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 7242467 - 7242503
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  7242467 aaaattgtttaaagtctcgcaaattagacctataatt 7242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 8996561 - 8996525
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  8996561 aaaattgtttaaaatctcgcaaaatagacctataatt 8996525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 10092582 - 10092546
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  10092582 aaaattgtttaaagtctcgcaaattagacctataatt 10092546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 21435167 - 21435131
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  21435167 aaaattgtttaaagtctcgcaaattagacctataatt 21435131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 22658178 - 22658214
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  22658178 aaaattgtttaaagtctcgcaaattagacctataatt 22658214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 36060685 - 36060649
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  36060685 aaaattgtttaaagtctcgcaaattagacctataatt 36060649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 38567435 - 38567399
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  38567435 aaaattgtttaaagtctcgcaaattagacctataatt 38567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 26873806 - 26873742
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||| |||||||| ||||| |||||||||||| ||| |||| ||||||||| ||||||    
T  26873806 cacaaaattgtataaaatctcgcaaaatagacctataatcattgattttttaatttttccgggtg 26873742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 23469227 - 23469263
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23469227 aaaattgtttaaaatctcgcaaattagacctataatt 23469263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 36675318 - 36675354
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| |||||||||||||||||||||||    
T  36675318 aaaattgtttaaagtcttgcaaattagacctataatt 36675354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 41367761 - 41367698
Alignment:
Q  145 acaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtga 209  Q
    |||||||||  |||||||| ||||||||||||||||| |||| |||| ||||||||| |||||||    
T  41367761 acaaaattgcataaaatctcgcaaattagacctataa-tattgattttttaatttttccgggtga 41367698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 25303949 - 25304003
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    |||||||||||||||||  || | ||||||||||||| ||||||| |||||||||    
T  25303949 aaaattgtttaaaatctcacataatagacctataattgttaattttttaattttt 25304003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 9014029 - 9013992
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatta 184  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  9014029 aaaattgtttaaagtctcgcaaattagacctataatta 9013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 16834106 - 16834143
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatta 184  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  16834106 aaaattgtttaaagtctcgcaaattagacctataatta 16834143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 31428840 - 31428783
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttt 201  Q
    ||||||||||  |||||||||||||| ||||||||||||  || |||| |||||||||    
T  31428840 cacaaaattgcataaaatcttgcaaaatagacctataatcgttgattttttaattttt 31428783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 36675542 - 36675603
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgg 205  Q
    ||||||||||  ||||||||  |||| |||| ||||||| |||||||| |||||||||||||    
T  36675542 cacaaaattgcataaaatctcacaaaatagatctataatcattaattttttaattttttcgg 36675603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 17167194 - 17167158
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  17167194 aaaattgtttaaagtctcgcaaattagacctataatt 17167158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 22723831 - 22723895
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  22723831 cacaaaattgcataaaatctcgcaaagtagacctataatcgttgattttttaatttttccgggtg 22723895  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 29502187 - 29502251
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||||||||| || |||||| ||  ||||||| |||| |||||||||||    
T  29502187 cacaaaattgaataaaatcttgcaaaatatacctattatcgttaattttttaaatttttcgggtg 29502251  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 29663128 - 29663092
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29663128 aaaattgtttaaagtcttgcaaaatagacctataatt 29663092  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 40055918 - 40055882
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  40055918 aaaattgtttaaagtctcgcaaattagacctataatt 40055882  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 44143088 - 44143052
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  44143088 aaaattgtttaaagtctcgcaaattagacctataatt 44143052  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 46027783 - 46027719
Alignment:
Q  144 cacaaaattgtttaaaatcttgcaaattagacctataattattaatttattaattttttcgggtg 208  Q
    ||||||||||  |||||||| ||||| ||||||||||||  || |||| ||||||||| ||||||    
T  46027783 cacaaaattgcataaaatctcgcaaaatagacctataatcgttgattttttaatttttccgggtg 46027719  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 65375 - 65339
Alignment:
Q  147 aaaattgtttaaaatcttgcaaattagacctataatt 183  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  65375 aaaattgtttaaagtctcgcaaattagacctataatt 65339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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