View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_low_63 (Length: 229)
Name: NF3640_low_63
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_63 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42560523 - 42560734
Alignment:
| Q |
1 |
tgcattgtgatgttatggcgaaaacgcatatgcacattttatttgtctgtgcaaaggttgtcaaccgttgggaggtggtgcaacttaatgacattattcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42560523 |
tgcattgtgatgttatggcgaaaacgcatatgcacattttatttgtctgtgcaaaggttgtcaaccgttgggaggtggtgcaacttaatgacattattcg |
42560622 |
T |
|
| Q |
101 |
caattcgctttgcatcgctaacgattttttcacacttttatttgaattctttgataggatgacatttaaacaacaatcttcggcctccccaatcattgtg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42560623 |
caattcgcttcgcatcgctaacgattttttcacacttttatttgaattctttgataggatgacatctaaacaacaatcttcggcctccccaatcattgtg |
42560722 |
T |
|
| Q |
201 |
caacgagcgaag |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42560723 |
caacgagcgaag |
42560734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University