View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_low_64 (Length: 229)
Name: NF3640_low_64
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_64 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
| [»] chr5 (20 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 12907148 - 12907364
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907148 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
12907247 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12907248 |
atggaagcttagaacagtggttacatcctgaaactttgaatgcaaatcctccaacaacattgaaccttggtcttagattaaacatcatcatcgatgttgc |
12907347 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12907348 |
ttctgcattacattatc |
12907364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 12932237 - 12932451
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12932237 |
aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaa |
12932336 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12932337 |
atggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgc |
12932436 |
T |
|
| Q |
213 |
ttctgcattacatta |
227 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
12932437 |
ttctgcattgcatta |
12932451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 12899535 - 12899744
Alignment:
| Q |
20 |
gacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaag |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12899535 |
gacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaag |
12899634 |
T |
|
| Q |
120 |
cttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgcttctgca |
219 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
12899635 |
cttagaacaatggttacatcccgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgca |
12899734 |
T |
|
| Q |
220 |
ttacattatc |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
12899735 |
ttacattatc |
12899744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 12948602 - 12948818
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12948602 |
aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataacaaaggccaagaatttaaagctctagtttttgaatacatgaaaa |
12948701 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||| | |||||||||| ||| |||||||||||||| ||| ||||||| |
|
|
| T |
12948702 |
atggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttcgtcgtagattaaacatcattatcgatgttgc |
12948801 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12948802 |
ttctgcattacattatc |
12948818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 12958036 - 12958252
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12958036 |
aatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatggaaa |
12958135 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| | || |||||| | ||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12958136 |
atggaagcttagaacagtggttacatcctcaaattttgaatgcgagtcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgc |
12958235 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12958236 |
ttctgcattacattatc |
12958252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 17923654 - 17923440
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923654 |
aatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
17923555 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
17923554 |
atggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttggtcatagattaaacatcatcatcgatgttgc |
17923455 |
T |
|
| Q |
213 |
ttctgcattacatta |
227 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
17923454 |
ttctgcattgcatta |
17923440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 7264 - 7465
Alignment:
| Q |
26 |
gaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
125 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7264 |
gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
7363 |
T |
|
| Q |
126 |
acagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgcttctgcattacat |
225 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7364 |
acagtggttacatcctgagactttgaatgcaaatcctccaataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacat |
7463 |
T |
|
| Q |
226 |
ta |
227 |
Q |
| |
|
|| |
|
|
| T |
7464 |
ta |
7465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 10216997 - 10216784
Alignment:
| Q |
16 |
attagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatg |
115 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10216997 |
attagacaccgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatg |
10216898 |
T |
|
| Q |
116 |
gaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgcttc |
215 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||| ||| || | ||||||| | |||| |||||||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
10216897 |
gaagcttagaacaatggttgcatcctgagattttaaattcagagcatccaaaaacattggaccttggtcataggttaaacatcattatcgatgttgcttc |
10216798 |
T |
|
| Q |
216 |
tgcattacattatc |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10216797 |
ggcattacattatc |
10216784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 11048905 - 11048692
Alignment:
| Q |
16 |
attagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatg |
115 |
Q |
| |
|
||||||||| |||| || |||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11048905 |
attagacaccgaaacttagttaaggttttaacctgttgttctagtacagattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatg |
11048806 |
T |
|
| Q |
116 |
gaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgcttc |
215 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||| || | ||||||| | |||| |||||||| | || ||||||||||| ||| |||||||||| |
|
|
| T |
11048805 |
gaagcttagaacaatggttacatcctgagattttaaattcagagcatccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttc |
11048706 |
T |
|
| Q |
216 |
tgcattacattatc |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11048705 |
tgcattacattatc |
11048692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 10564985 - 10565201
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
10564985 |
aatattcgacaccgaaatttagttaaggttttaacctgttgttcaagtacagattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaa |
10565084 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| |||||| | | ||||| | |||| || ||| ||| |||||| |||| || ||| ||||||| |
|
|
| T |
10565085 |
atggaagcttagatcaatggttgcatcctgagattttaaatgcagaacccccaacaacattggactttgctcatagattatacattattatcgatgttgc |
10565184 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10565185 |
ttctgcattacattatc |
10565201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 10580962 - 10581177
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| |||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
10580962 |
aatattagacaccaaaatttagtcaaggttctaacatgttgttctagtacaaattacaaaggccaagaatttaaagctttagttttttattacatgaaaa |
10581061 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| ||| | |||| | | || ||| | ||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
10581062 |
atggaagcttagaacaatggttgcatcctcaga-tttaagtgcagaacctctaacaacattgaaccttggtcatagattaaacatcattatggatgttgc |
10581160 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10581161 |
ttctgcattacattatc |
10581177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10740950 - 10740734
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
10740950 |
aatattagacaccgaaatttagttaagattttgacatgttgttctagtacagattacaaaggtcaaacttttaaagctcttgtttttgattacatgaaaa |
10740851 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| |||||| ||||||||| | |||| |||||||||| |||||||||||||| | | |||| || |
|
|
| T |
10740850 |
atggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgaacgatgtcgc |
10740751 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10740750 |
cactgcattacattatc |
10740734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 10604716 - 10604926
Alignment:
| Q |
19 |
agacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaa |
118 |
Q |
| |
|
|||||| | ||||| ||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10604716 |
agacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaa |
10604815 |
T |
|
| Q |
119 |
gcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgcttctgc |
218 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| |||||| | | |||||| | ||| |||||||| | ||||| |||||||| | ||||||||||||| |
|
|
| T |
10604816 |
gcttagaacaatggttgcatcctgagattttaaatgcagagcctccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgc |
10604915 |
T |
|
| Q |
219 |
attacattatc |
229 |
Q |
| |
|
||| ||||||| |
|
|
| T |
10604916 |
attgcattatc |
10604926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 10611670 - 10611884
Alignment:
| Q |
15 |
tattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaat |
114 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
10611670 |
tattagacaccgaaatttagttaagattttaacatgttgttctagtacagattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaat |
10611769 |
T |
|
| Q |
115 |
ggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgctt |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||| |||| | | ||| || | | |||| |||| |||| |||||||||||||| || |||||| || |
|
|
| T |
10611770 |
ggaagcttagaacaatggttgcatcccaaggttttaaatgaagagcatacagcaacattggacctcagtcatagattaaacatcattatggatgttggtt |
10611869 |
T |
|
| Q |
215 |
ctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10611870 |
ctgcattacattatc |
10611884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 10717191 - 10716975
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||| |||||| ||||| | || ||| | ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
10717191 |
aatatcagacaccgaaatctagtgaagatattaacatgttgttctagtacagattacaaaggtcaaacttttaaagctctagtttttgattacatgaaaa |
10717092 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| |||||| ||||||||| | |||| |||||||||| |||||||||||||| ||| |||| || |
|
|
| T |
10717091 |
atggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttggtcatagattaaacatcatgatcgatgtcgc |
10716992 |
T |
|
| Q |
213 |
ttctgcattacattatc |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10716991 |
cactgcattacattatc |
10716975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 10747269 - 10747050
Alignment:
| Q |
10 |
aagaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatga |
109 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| ||||||| ||||||||||| | | ||||||||| ||| || |||||||||||||||||| | ||||| | |
|
|
| T |
10747269 |
aagaacattagacaccgaaatttagttaagattttaacgtgttgttctagtatagattacaaagttcaggagtttaaagctctagttttttattacataa |
10747170 |
T |
|
| Q |
110 |
aaaatggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgt |
209 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||| |||| |||| | | ||||||| | || ||||||| || |||||||||||||| ||| |||| |
|
|
| T |
10747169 |
aaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagaccttggccacagattaaacatcattatcgatgt |
10747070 |
T |
|
| Q |
210 |
tgcttctgcattacattatc |
229 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
10747069 |
tgcttcaacattacattatc |
10747050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 7192963 - 7193090
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||||||||| || ||| |||||||||||||||||||||||||| |||| |||||||||||||| | |
|
|
| T |
7192963 |
aatattagacatcgaaatttggttaagattttgacatgttgttccagtacagattacaaaggtcaagaatttaaagctttagtctttgaatacatgaaca |
7193062 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatcc |
140 |
Q |
| |
|
| |||||||||||||| ||| ||||||| |
|
|
| T |
7193063 |
acggaagcttagaacaatggctacatcc |
7193090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 19606116 - 19605902
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||| ||||||||||| | || ||||||||| |||||| ||||||||||||||||| ||||||| || |
|
|
| T |
19606116 |
aatattagacatcgaaatttagttaagattttaacttgttgttctagtattgataacaaaggtctagaattcaaagctctagtttttgagtacatgagaa |
19606017 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgttgc |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | || |||||||| ||||||||| | |||||| ||| || |||||||| ||| | || ||||| | |
|
|
| T |
19606016 |
atggaagcttagaacaatggttgcatcccgggacaatgaatgcagatcatccaagaacattgaagtttgagcaaagattaaatatccttgtcgatgtttc |
19605917 |
T |
|
| Q |
213 |
ttctgcattacatta |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19605916 |
ttctgcattacatta |
19605902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 10558860 - 10558973
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||| ||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
10558860 |
aatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaa |
10558959 |
T |
|
| Q |
113 |
atggaagcttagaa |
126 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10558960 |
atggaagcttagaa |
10558973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 10588684 - 10588465
Alignment:
| Q |
10 |
aagaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatga |
109 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||||||||||||||||| | || |||| ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
10588684 |
aagaatgttagacatcgaaatttggccaagattttaacatgttgttctggtactgattataaaggtcaagaatttaaagctttagtttttgattacatga |
10588585 |
T |
|
| Q |
110 |
aaaatggaagcttagaacagtggttacatccggagattttgaatgcaaatcatccaacgaaattgaaccttggtcagagattaaacatcatcatcaatgt |
209 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||| || | ||||| || | ||||||| | ||| |||||| ||| |||||||| |||| ||| || | |
|
|
| T |
10588584 |
aaaatggaagtttagaacaatggcttcatccatggaatgtgaattcagagcatccaagaacgttggaccttgttcatagattaaatatcactatcgatat |
10588485 |
T |
|
| Q |
210 |
tgcttctgcattacattatc |
229 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
10588484 |
tgcttctgcactacattatc |
10588465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 10763369 - 10763270
Alignment:
| Q |
28 |
aatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaac |
127 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10763369 |
aatttagttaagattttaacatgttgttctagtactgattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaac |
10763270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 9836579 - 9836464
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||||||||| | |||| |||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
9836579 |
aatattagacatcgaaatttggtcaaggttataacatgttgttctagtattgattataaaggtggagaatttaaagctttagtttttgattacatgaaaa |
9836480 |
T |
|
| Q |
113 |
atggaagcttagaaca |
128 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9836479 |
atggaagcttagaaca |
9836464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 10660324 - 10660209
Alignment:
| Q |
25 |
agaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttag |
124 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || ||| |||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
10660324 |
agaaatttggtcaaggttttgacatgttgttcaagtacagattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctag |
10660225 |
T |
|
| Q |
125 |
aacagtggttacatcc |
140 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
10660224 |
aacaatggctacatcc |
10660209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 9825058 - 9825180
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |||||| | |||||||||| |||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
9825058 |
aatattagacatcgaaatttggttaagattttaacatgtttttctagtatcgattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaa |
9825157 |
T |
|
| Q |
113 |
at-ggaagcttagaacagtggtt |
134 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
9825158 |
atgggaagcttagaacaatggtt |
9825180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 10652441 - 10652326
Alignment:
| Q |
25 |
agaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttag |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || |||||||||||||||| ||||| ||| |||| |||||||||||||| || |||| | ||| |
|
|
| T |
10652441 |
agaaatttggttaaggttttgacatgttgttcgagtaccgattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaacggaaacctag |
10652342 |
T |
|
| Q |
125 |
aacagtggttacatcc |
140 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
10652341 |
aacaatggctacatcc |
10652326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 9850952 - 9850836
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaa-gctctagtttttgaatacatgaaa |
111 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| | ||||||||| | |||||||||| || ||||| ||| |||||||||||| | ||||||| | |
|
|
| T |
9850952 |
aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgata |
9850853 |
T |
|
| Q |
112 |
aatggaagcttagaaca |
128 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9850852 |
aatggaagcttagaaca |
9850836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 10550742 - 10550869
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||| ||||||||| | ||||| |||| || |||||||| |||||| |||||||||| || ||||||||||| || ||||| ||||||| || |
|
|
| T |
10550742 |
aatattaggcacagaaatctagttaaaattttgacttgttgttccagcacagattacaaaggaagtgagtttaaagctcttgtatttgagtacatgagaa |
10550841 |
T |
|
| Q |
113 |
atggaagcttagaacagtggttacatcc |
140 |
Q |
| |
|
|||||| ||||||| | ||||| ||||| |
|
|
| T |
10550842 |
atggaaacttagaaaattggttgcatcc |
10550869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 31467413 - 31467300
Alignment:
| Q |
13 |
aatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaa |
112 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| | ||||| || ||| ||| ||||| |||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
31467413 |
aatattagacaccgaaatttggttaagattttaacaagctgttccagtacagatttcaaagatcaagaatttaaagctcttgttttcgagtacatgaaaa |
31467314 |
T |
|
| Q |
113 |
atggaagcttagaa |
126 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
31467313 |
acggaagcttagaa |
31467300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 28605612 - 28605696
Alignment:
| Q |
41 |
ttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
125 |
Q |
| |
|
|||||||||||||||| || | ||||||| ||| | ||||| |||||| |||||||||| |||||| |||||||||| ||||| |
|
|
| T |
28605612 |
ttttaacatgttgttcaagtatggattacaatggtaatgaattcaaagctttagtttttgagtacatggaaaatggaagtttaga |
28605696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 39898877 - 39898834
Alignment:
| Q |
82 |
tttaaagctctagtttttgaatacatgaaaaatggaagcttaga |
125 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
39898877 |
tttaaagcaatagtttttgaatacatgacaaatggaagcttaga |
39898834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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