View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_low_71 (Length: 206)
Name: NF3640_low_71
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 49116492 - 49116568
Alignment:
| Q |
112 |
caaacctccaaagtttttaactgattgtttttagtgcaagtttcatccatattcacataaacaatgttaacgtatgt |
188 |
Q |
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| T |
49116492 |
caaacctccaaagtttttaactgattgtttttagtgcaagtttcatccatattcacataaacaatgttaacttatgt |
49116568 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 49116303 - 49116365
Alignment:
| Q |
32 |
tttgtaatggaagagttttgaacttctttttatagacaagtgttatcataagttatgttagta |
94 |
Q |
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| T |
49116303 |
tttgcaatggaagagttttgaacttctttttatagacaagtgttatcataagttatgttagta |
49116365 |
T |
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