View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3641_high_2 (Length: 424)

Name: NF3641_high_2
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3641_high_2
NF3641_high_2
[»] chr4 (4 HSPs)
chr4 (96-424)||(39186901-39187220)
chr4 (100-263)||(15606271-15606435)
chr4 (174-280)||(46925467-46925573)
chr4 (175-263)||(15606698-15606787)
[»] chr3 (3 HSPs)
chr3 (1-94)||(49855716-49855809)
chr3 (18-88)||(50064291-50064361)
chr3 (203-264)||(16250983-16251045)
[»] chr1 (2 HSPs)
chr1 (96-259)||(36204302-36204466)
chr1 (165-263)||(35574257-35574355)
[»] chr7 (2 HSPs)
chr7 (97-257)||(43738688-43738849)
chr7 (169-282)||(42903970-42904083)
[»] chr8 (3 HSPs)
chr8 (101-257)||(34344035-34344192)
chr8 (102-182)||(36114797-36114877)
chr8 (143-263)||(42143853-42143973)
[»] scaffold0961 (1 HSPs)
scaffold0961 (148-263)||(870-985)
[»] chr5 (2 HSPs)
chr5 (143-282)||(32029998-32030136)
chr5 (165-263)||(22477145-22477243)
[»] chr6 (2 HSPs)
chr6 (165-263)||(16543436-16543534)
chr6 (155-260)||(17834605-17834710)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 96 - 424
Target Start/End: Original strand, 39186901 - 39187220
Alignment:
Q  96 agtgtgtgtttggcaccacgttttcagccttcaaacatggtttttagttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtg 195  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  39186901 agtgtgtgtttggcatcacgttttcagccttcaaacgtggtttttagttgtcaaactgcgttttgccatttttcatgttgtttggatgaatgaaaaagtg 39187000  T
Q  196 agtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacggttgggggaaacgtggtttctgcaattcttgga 295  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||| |||||| || |||||||||||||||||||||||||    
T  39187001 agtttgtgaaaagtggttttggtctcaaaacgcagttttgctgaagctgagattcgaagcttctgcggttgaggaaaacgtggtttctgcaattcttgga 39187100  T
Q  296 tgtcttttccgatttctcaactttgcccctctttaatggctacatttgccgtttcatcttcttttattacaggaacctctgtttctaaaggttggagaag 395  Q
    |||||||||||||||||||||||||||| |||||||| || || ||||||||      ||||||||| ||||||||||||||||||||||||||||||||    
T  39187101 tgtcttttccgatttctcaactttgcccttctttaat-gccac-tttgccgt------ttcttttatcacaggaacctctgtttctaaaggttggagaag 39187192  T
Q  396 ataggttgtttggtggtacccatttgttt 424  Q
    ||||||| ||||||||  |||||||||||    
T  39187193 ataggttatttggtgg-gcccatttgttt 39187220  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 15606271 - 15606435
Alignment:
Q  100 tgtgtttggcaccacgttttcagccttcaaacatggtttttagttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtgagtt 199  Q
    |||||||||||||||||||| || || | ||||||| ||    |||   |||| ||||||||  |||| |||||||||||||| ||||||||||  ||||    
T  15606271 tgtgtttggcaccacgtttttaggctccgaacatgggttacttttgtggaacgtcgttttgctcttttccatgttgtttggatgaatgaaaaagcaagtt 15606370  T
Q  200 tgtgaaaagtggttt-tggcctcaaaacgcagttttgctgaagctgagattcctagcttctacgg 263  Q
    ||||||| | ||||| || |  |||||| |||| || |||||||||||||||  |||||||||||    
T  15606371 tgtgaaacgcggtttctgtctccaaaacacagtcttcctgaagctgagattcagagcttctacgg 15606435  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 46925467 - 46925573
Alignment:
Q  174 tgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacggttgggggaaa 273  Q
    ||||||||| |||||||| |  ||||| ||||| |||||||| | ||| |||||  |||||||||||||| |||||  ||||||||||||  |||| |||    
T  46925467 tgtttggatgaatgaaaaggcaagtttttgaaacgtggtttttgtctccaaacgtggttttgctgaagctcagatttgtagcttctacggcaggggaaaa 46925566  T
Q  274 cgtggtt 280  Q
     ||||||    
T  46925567 tgtggtt 46925573  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 15606698 - 15606787
Alignment:
Q  175 gtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctc-aaaacgcagttttgctgaagctgagattcctagcttctacgg 263  Q
    |||||||| ||||||||||  ||||||||||| | |||||  | ||| ||||| |||| || |||||||||||||||  |||||||||||    
T  15606698 gtttggatgaatgaaaaagcaagtttgtgaaacgcggtttctgtctccaaaacacagtcttcctgaagctgagattcagagcttctacgg 15606787  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 49855809 - 49855716
Alignment:
Q  1 ctatgtagttataatatttttggatatgattaatataattgaaagtggcccaccagttgatgtttcagctgttagttcaatgtaagatattatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49855809 ctatgtagttataatatttttggatatgattaatataattgaaagtggcccaccagttgatgtttcagctgttagttcaatgtaagatattatg 49855716  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 50064361 - 50064291
Alignment:
Q  18 ttttggatatgattaatataattgaaagtggcccaccagttgatgtttcagctgttagttcaatgtaagat 88  Q
    ||||||| || ||||||| ||||||| | ||||| ||||||||||||||||| ||| |||| |||||||||    
T  50064361 ttttggagattattaatacaattgaaggcggcccgccagttgatgtttcagccgttcgttctatgtaagat 50064291  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 16251045 - 16250983
Alignment:
Q  203 gaaaagtggttttggcctcaaaacgc-agttttgctgaagctgagattcctagcttctacggt 264  Q
    |||| |||||||||  |||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  16251045 gaaaggtggttttgagctcaaaacaccagttttgctgaagctgatattcctagcttatacggt 16250983  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 36204302 - 36204466
Alignment:
Q  96 agtgtgtgtttggcaccacgttttcagccttcaaacatggtttttagttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtg 195  Q
    ||||||||||||||||||||||||||||   ||||| |||||||| ||| |||||| ||||||| | |||||||||||||||||||| ||||||||||||    
T  36204302 agtgtgtgtttggcaccacgttttcagctcccaaacgtggttttttgttcccaaactgcgttttccaatttttcatgttgtttggatgaatgaaaaagtg 36204401  T
Q  196 agtttgtgaaaagtggttttggcctcaaaacg-cagtttt-gctgaagctgagattcctagcttct 259  Q
    ||||||| ||| ||| |||| || |||||||| |||||||  |||||||| |||||| ||||||||    
T  36204402 agtttgtaaaacgtgatttt-gcttcaaaacgccagttttctctgaagctcagattcatagcttct 36204466  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 35574355 - 35574257
Alignment:
Q  165 ttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacgg 263  Q
    |||||||| ||||||||| | ||||||||  | ||||||||| | | ||||| |  |||||| |||||||  |||||||||||||| ||||||||||||    
T  35574355 ttttcatgctgtttggatgactgaaaaagcaattttgtgaaacgcgtttttgtctccaaaactcagttttcatgaagctgagattcatagcttctacgg 35574257  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 43738849 - 43738688
Alignment:
Q  97 gtgtgtgtttggcaccacgttttcagccttcaaacatggtttttagttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtga 196  Q
    ||||||||||||| |||||||||||||   |||||||||||||| ||| | |||| ||||||| | |||||||| ||||||||||| |||||||||||||    
T  43738849 gtgtgtgtttggccccacgttttcagctcccaaacatggttttttgttcctaaactgcgtttttcaatttttcacgttgtttggatgaatgaaaaagtga 43738750  T
Q  197 gtttgtgaaaagtggttttggcctcaaaacg-cagtttt-gctgaagctgagattcctagctt 257  Q
    |||||| ||| |||||||| || |||||||| |||||||  |||||||| |||||| ||||||    
T  43738749 gtttgtaaaacgtggtttt-gcttcaaaacgtcagttttctctgaagctcagattcatagctt 43738688  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 42903970 - 42904083
Alignment:
Q  169 catgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacggttggg 268  Q
    |||||||||||||| ||||||||||  ||||||||||| ||| |||| | ||| |||||  |||||||| ||||| |||||| ||||||||||||  |||    
T  42903970 catgttgtttggatgaatgaaaaagcaagtttgtgaaatgtgatttttgtctccaaacgtggttttgcttaagctcagattcatagcttctacggcaggg 42904069  T
Q  269 ggaaacgtggtttc 282  Q
    | ||||||||||||    
T  42904070 gaaaacgtggtttc 42904083  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 34344192 - 34344035
Alignment:
Q  101 gtgtttggcaccacgttttcagccttcaaacatggttttta-gttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtgagtt 199  Q
    |||||||||||||||||||||||   ||||| | ||||||  ||| | |||| ||||||| | |||||||||||||||||||| ||||||||||||||||    
T  34344192 gtgtttggcaccacgttttcagctcccaaacgtagtttttttgtttctaaactgcgtttttcaatttttcatgttgtttggatgaatgaaaaagtgagtt 34344093  T
Q  200 tgtgaaaagtggttttggcctcaaaacg-cagttttgctgaagctgagattcctagctt 257  Q
    ||| ||| ||| |||| || |||||||| ||||||| |||||||| |||||| ||||||    
T  34344092 tgtaaaacgtgatttt-gcttcaaaacgtcagttttcctgaagctcagattcatagctt 34344035  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 36114877 - 36114797
Alignment:
Q  102 tgtttggcaccacgttttcagccttcaaacatggtttttagttgccaaacggcgttttgccatttttcatgttgtttggat 182  Q
    |||||||||||||||||| || || ||||| |||||| |  ||||||||||   ||||||  |||||||||||||||||||    
T  36114877 tgtttggcaccacgtttttagactccaaacgtggtttatttttgccaaacgtgattttgctctttttcatgttgtttggat 36114797  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 42143973 - 42143853
Alignment:
Q  143 ttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagc 242  Q
    |||||||||| | ||||||   |||||||||||||||||| ||||||||||  ||| ||  ||| |||||||| |   |||||| || |||| |||||||    
T  42143973 ttgccaaacgccattttgcacattttcatgttgtttggatgaatgaaaaagcaagtatggaaaacgtggtttttgttccaaaacacaattttcctgaagc 42143874  T
Q  243 tgagattcctagcttctacgg 263  Q
    |||||||   |||||||||||    
T  42143873 tgagatttggagcttctacgg 42143853  T

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Target: scaffold0961 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 985 - 870
Alignment:
Q  148 aaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgaga 247  Q
    ||||| ||||||||  |||| |||||||||||||| ||||||||||  | ||||||||| | | ||||| |  |||||| |||||||  ||||| |||||    
T  985 aaacgccgttttgctcttttccatgttgtttggatgaatgaaaaagcaattttgtgaaacgcgtttttgtctccaaaactcagttttcatgaagttgaga 886  T
Q  248 ttcctagcttctacgg 263  Q
    ||| ||||||||||||    
T  885 ttcatagcttctacgg 870  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 32029998 - 32030136
Alignment:
Q  143 ttgccaaacggcgttttgccatttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgc-agttttgctgaag 241  Q
    ||||||||| ||||||   |||||| |||||||||||||| |||||||||||  |||||| ||| ||| ||||||  |||||| ||  ||||| ||||||    
T  32029998 ttgccaaactgcgtttctgcattttccatgttgtttggatgaatgaaaaagtcggtttgtaaaacgtgattttgg-ttcaaaaagcttgttttcctgaag 32030096  T
Q  242 ctgagattcctagcttctacggttgggggaaacgtggtttc 282  Q
    ||||||||  |||||||| ||| | ||| ||||||||||||    
T  32030097 ctgagatttgtagcttctgcggct-gggaaaacgtggtttc 32030136  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 22477145 - 22477243
Alignment:
Q  165 ttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacgg 263  Q
    |||||||| ||||||||| | ||||||||  | ||||||||| | | ||||| |  |||||| |||||||  |||||||||||||| ||||||||||||    
T  22477145 ttttcatgctgtttggatgactgaaaaagcaattttgtgaaacgcgtttttgtctccaaaactcagttttcatgaagctgagattcatagcttctacgg 22477243  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 16543436 - 16543534
Alignment:
Q  165 ttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctagcttctacgg 263  Q
    |||||||| ||||||||||  ||||||||  | |||||||||   | ||||| |  |||||| |||||||  |||||||||||||| ||||||||||||    
T  16543436 ttttcatgctgtttggatagctgaaaaagcaattttgtgaaacacgtttttgtctccaaaactcagttttcatgaagctgagattcatagcttctacgg 16543534  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 17834710 - 17834605
Alignment:
Q  155 gttttgccatttttcatgttgtttggataaatgaaaaagtgagtttgtgaaaagtggttttggcctcaaaacgcagttttgctgaagctgagattcctag 254  Q
    |||||||  |||| |||| ||||||||| ||||||||||  | ||||||||| | | || || | ||||||  |||||||  |||||||||||||| |||    
T  17834710 gttttgctcttttccatgctgtttggatgaatgaaaaagcaattttgtgaaacgcgtttctgtcttcaaaattcagttttcatgaagctgagattcatag 17834611  T
Q  255 cttcta 260  Q
    ||||||    
T  17834610 cttcta 17834605  T

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