View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_high_3 (Length: 398)
Name: NF3641_high_3
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 388
Target Start/End: Complemental strand, 23035790 - 23035425
Alignment:
| Q |
25 |
aaccatatgctcatcaaatctaaatttatggnnnnnnnn-ataacttaaacttaacagaaggaccaaaaacaaaactttaactaaatgcaaggaccaatg |
123 |
Q |
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| T |
23035790 |
aaccatatgctcatcaaatctaaatttatggtttttttttataacttgaacttaacagaaggatcaaaaacaaaactttaactaaatgcaaggatcaatg |
23035691 |
T |
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| Q |
124 |
acatatttaaatctaaatgaaaaagtggaatatttttcaatcaaaggcctccctcttccagctcacccaattaa-nnnnnnnnnccactcctccactcaa |
222 |
Q |
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| T |
23035690 |
atatatttaaacctaaattaaaaagtggaatatttttcaatcaaaggcctccctcttccaactcacccaattaattttttttttccaatcctccactcaa |
23035591 |
T |
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| Q |
223 |
aggaacttgctttgaatttgaagttattcattcaaaaccttttcttaaactacttaacaccactctacctcccatagacacnnnnnnnctatcatctttt |
322 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23035590 |
aggaacttgctttgaatttaaagttattcattcaaaaccttttcttaaactacttaacaccactctacctcccatagacac-agaaaactatcatctttt |
23035492 |
T |
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| Q |
323 |
ctcatactcaaattttattatcaatatgaaaattcattattc-taagtaaaaggaaacatacctttg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
23035491 |
ctcatactcaaattttattatcaatatgaaaattcatcattcttaagtaaaaggaaacatacctttg |
23035425 |
T |
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