View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_high_9 (Length: 241)
Name: NF3641_high_9
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8461816 - 8461603
Alignment:
| Q |
1 |
aaagagtcacctataaatccaaaaaatattaacagaattatattagtgtttgaaagacccattgcttacaaaggcatcaatgatttctttatacggcgtt |
100 |
Q |
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| T |
8461816 |
aaagagtcacctataaatccaaaaaatattaacagaactatattagtgtttcaaagatccactgcttacaaaggcaacaatgatttctttatacggcgtt |
8461717 |
T |
|
| Q |
101 |
ccaaataatgaccattatatgatgaactaaactaatggtgttagaggggctccaagggatgatagacattcgttaagatcatagacatgctagaaaaggt |
200 |
Q |
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| T |
8461716 |
ccaaataatgaccattatatgatgaactaaactaatggtgttacaggggctccaagggatgatagacattcgttaagatcatagacatgctagaaaagg- |
8461618 |
T |
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| Q |
201 |
ttatattcactggat |
215 |
Q |
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| T |
8461617 |
tcatattcactggat |
8461603 |
T |
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