View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_low_1 (Length: 869)
Name: NF3641_low_1
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 708; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 9 - 853
Target Start/End: Original strand, 33381699 - 33382544
Alignment:
| Q |
9 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaacacggaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33381699 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaaaacggaa |
33381798 |
T |
|
| Q |
109 |
gttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381799 |
gttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttg |
33381898 |
T |
|
| Q |
209 |
aatattattgtacatatgttgagtgacaaagattcaggccaatgnnnnnnnnnnnnnnnnnnnnnnaataatttcataagtgcattaaatttgtatagtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
33381899 |
aatattattgtacatatgttgagtgacaaagattcaggccaatgttttgattttgattttgattttaataatttcataagtgcattaaatttatatagtt |
33381998 |
T |
|
| Q |
309 |
tacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattattcctttgttattcaacaaaatctgcagctgggtatggatcttattc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381999 |
tacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattattcctttgttattcaacaaaatctgcagctgggtatggatcttattc |
33382098 |
T |
|
| Q |
409 |
aatctaatatcatggactcgagatggggaagtattttcaagtttcaatctaacatcattcctttaatagtatgatatcttcacattgtaacaagtttata |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382099 |
aatctaatatcatggactcgagatggggaagtattttcaagtttcaatctaacatcattcctttaatagtatgatatcttcacattgtaacaagtttata |
33382198 |
T |
|
| Q |
509 |
aggacattgattccatgtcataagatacctgttgacggtccttgtttcttttacgctattattcacgagtcattattcttatttgtgtaaggtgtttgaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
33382199 |
aggacattgattccatgtcataagatacctgttgacggtccttgtttcttttacgctattattcacgagttattattcttatttgtgtaaggtgtttgaa |
33382298 |
T |
|
| Q |
609 |
tgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacattgcattcattgatgagtgaattttcaaaca |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33382299 |
tgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacattgcattcattgatgggtgaattttcaaaca |
33382398 |
T |
|
| Q |
709 |
agtagtttattttggaaatcattttcaataactggttta-nnnnnnnnnnnnnnnngtgattttcattatggtaaacaaatacaaagtagttcctacttt |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382399 |
agtagtttattttggaaatcattttcaataactggtttatttttaaaaaaaaaaaagtgattttcattatggtaaacaaatacaaagtagttcctacttt |
33382498 |
T |
|
| Q |
808 |
tttaaagaatctctaaaatttaatctcaagattatgtattgagtat |
853 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382499 |
tttaaagaatctctaaaatttaatctcaagattatgtattgagtat |
33382544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 24630485 - 24630323
Alignment:
| Q |
90 |
gagatcagccaacacggaagttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataa |
189 |
Q |
| |
|
||||||||| |||| |||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24630485 |
gagatcagcaaacatggaagtcttcaacctgcaagaaaaataaaagtattgattttgtaagaagaaatcaacaccataaattgttggaggaaaacaataa |
24630386 |
T |
|
| Q |
190 |
taatgctcaaactgttttgaatattattgtacatatgttgagtgacaaagattcaggccaatg |
252 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
24630385 |
taatgctcaaacagttttgaatattattgtacatatgttgagtgacaaagagttaggccaatg |
24630323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 33266779 - 33266910
Alignment:
| Q |
293 |
ttaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacatt---attcctttgttattcaacaaaatctgcag |
389 |
Q |
| |
|
|||| ||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
33266779 |
ttaattttatatagtctacaagaagcaatcattacgttaaggttggccgctcctaactgatacacattcttattcctttgttattcaacaaaaactgcag |
33266878 |
T |
|
| Q |
390 |
ctgggtatggatcttattcaatctaatatcat |
421 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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|
| T |
33266879 |
ctggatatggatcttattcaatctaatatcat |
33266910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 396 - 510
Target Start/End: Original strand, 33276579 - 33276693
Alignment:
| Q |
396 |
atggatcttattcaatctaatatcatggactcgagatggggaagtattttcaagtttcaatctaacatcattcctttaatagtatgatatcttcacattg |
495 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| | | | || || ||||||| ||||||||||||||| |
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|
| T |
33276579 |
atggatcttattcaatcttgtatcatggacttgagatggggaagtattttaaagtttcaacatcatttttgtctttcaatagtacgatatcttcacattg |
33276678 |
T |
|
| Q |
496 |
taacaagtttataag |
510 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
33276679 |
taacaagttaataag |
33276693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 33061795 - 33061858
Alignment:
| Q |
9 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtga |
72 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
33061795 |
catcatcaacatacaatacgaatggctatcctttatattttaaagcatccctctccttttgtga |
33061858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33404376 - 33404443
Alignment:
| Q |
9 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaa |
76 |
Q |
| |
|
|||||||| ||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33404376 |
catcatcagcatacaacaagaatggctatcctttatattttaaagcatatctctccatttgtgattaa |
33404443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 33276517 - 33276575
Alignment:
| Q |
319 |
aatcgttacgttaagattggccgctcctaactgatacaca---ttattcctttgttatt |
374 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33276517 |
aatcgttacgttaaggttggccgctcctaactgatacacattcttattcctttgttatt |
33276575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 33266922 - 33266959
Alignment:
| Q |
473 |
aatagtatgatatcttcacattgtaacaagtttataag |
510 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
33266922 |
aatagtacgatatcttcacattgtaacaagttaataag |
33266959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 278 - 448
Target Start/End: Complemental strand, 12581063 - 12580893
Alignment:
| Q |
278 |
aatttcataagtgcattaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattatt-cctttgttattca |
376 |
Q |
| |
|
||||||||||| || ||||||||||||| |||| ||||||||||||| |||| ||||| ||| |||||| ||||| | |||| ||||||||||| |
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|
| T |
12581063 |
aatttcataagcgctttaaatttgtatattttatttgaagcaatcgttattttaatgttggctgctactaactaataca-actattaattttgttattca |
12580965 |
T |
|
| Q |
377 |
acaaaatctgcagctgggtatggatcttattcaatctaatatcatggactcgagatggggaagtattttcaa |
448 |
Q |
| |
|
|| ||| |||||||||| |||||| |||||||||||||||||||||||| ||||||| || |||||||||| |
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|
| T |
12580964 |
actaaaactgcagctggacatggattttattcaatctaatatcatggacttgagatggagaggtattttcaa |
12580893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 793
Target Start/End: Original strand, 46663760 - 46663789
Alignment:
| Q |
764 |
gtgattttcattatggtaaacaaatacaaa |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46663760 |
gtgattttcattatggtaaacaaatacaaa |
46663789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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