View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_low_10 (Length: 247)
Name: NF3641_low_10
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45209996 - 45209765
Alignment:
| Q |
1 |
ttctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcacttaattatagcatagactatttctatgacaacacatattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45209996 |
ttctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcactta----tagcatagactatttctatgacaacacatattat |
45209901 |
T |
|
| Q |
101 |
gatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaatt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209900 |
gatttacttataccttaattaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaatt |
45209801 |
T |
|
| Q |
201 |
gctgcgtttccctctcatctttctatagcgagaata |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45209800 |
gctgcgtttccctctcatctttctatagcgagaata |
45209765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 5007817 - 5007906
Alignment:
| Q |
138 |
ttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatctttctata |
227 |
Q |
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| T |
5007817 |
ttgcagtgacatggaatgttacatgcacatattcacaatttctggctcagaaaactccgacttgctgtgtctccctctcatctttctata |
5007906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 5550497 - 5550602
Alignment:
| Q |
120 |
taacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacctccaaattgctgcgtttccctctcatc |
219 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||| ||| || ||| |||||||||| |
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| T |
5550497 |
taacataactctgattgtttgcagtgacatggaatgtgacatgcacatattcacaatttttagctcaacaaactccaacttgttgtgttgccctctcatc |
5550596 |
T |
|
| Q |
220 |
tttcta |
225 |
Q |
| |
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||||| |
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| T |
5550597 |
attcta |
5550602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 5540344 - 5540216
Alignment:
| Q |
94 |
atattatgatttacttataccttaactaacattactctgatttgttgcagtgacatggaaggtgacatgcacatattcacaatttctagttcagaaacct |
193 |
Q |
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||||||||||||||| | |||||||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||| || |||| || |
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| T |
5540344 |
atattatgatttactaagaccttaac----attactctgatttttt-cagtgacatggaatgtgagatgcacatattcacaatttctagctccgaaaact |
5540250 |
T |
|
| Q |
194 |
ccaaattgctgcgtttccctctcatctttctata |
227 |
Q |
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|||| ||| || || | |||||||| ||||||| |
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|
| T |
5540249 |
ccaacttgttgtgtcgctctctcatcattctata |
5540216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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