View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_low_11 (Length: 242)
Name: NF3641_low_11
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52269054 - 52269274
Alignment:
| Q |
1 |
atccgcatcaaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52269054 |
atccgcatcaaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttag |
52269153 |
T |
|
| Q |
101 |
aaaactggtaatttggtttggatagaaaatgaagatttgattgaattttcaatatgaaaatgaaataaattattcccactgttgttgggtgaacaaagga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52269154 |
aaaactggtaatttggtttggatagaaaattaagatttgattgaatcttcaatataaaattgaaataaattattcccactgttgttgggtgaacaaagga |
52269253 |
T |
|
| Q |
201 |
ggaagaaatccagtgactcgc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
52269254 |
ggaagaaatccagtgactcgc |
52269274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13744189 - 13744069
Alignment:
| Q |
1 |
atccgcatcaaagttcacttccttattccttcacaagtcccaatataaatagatatcatcgtaatgaagtaatatagcaaaaccacaaaggcaacgttag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||| |||||||| |
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| T |
13744189 |
atccacatcaaagttcacttccttattccttcacaagtcccaatataaatacatatcatcacaatgaagtaa-atagcaaaaccacagaggtaacgttag |
13744091 |
T |
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| Q |
101 |
aaaactggtaatttggtttgga |
122 |
Q |
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||||| |||||||||||||||| |
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| T |
13744090 |
aaaaccggtaatttggtttgga |
13744069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 13744059 - 13743994
Alignment:
| Q |
151 |
aatatgaaaatgaaata-aattattcccactgttgttgggtgaacaaaggaggaagaaatccagtg |
215 |
Q |
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||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13744059 |
aatataaaaatgaaatagaatgattcccactgttgttgggtgaacaaaggaagaagaaatccagtg |
13743994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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