View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_low_6 (Length: 284)
Name: NF3641_low_6
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 60 - 276
Target Start/End: Complemental strand, 23408093 - 23407877
Alignment:
| Q |
60 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
159 |
Q |
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| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
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| Q |
160 |
agaggtgagcttagaaggaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
259 |
Q |
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| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
23407894 |
T |
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| Q |
260 |
tggaattggttcatctc |
276 |
Q |
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||| |||||||| |||| |
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| T |
23407893 |
tggtattggttcttctc |
23407877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 23408224 - 23408192
Alignment:
| Q |
18 |
agatatctgctatatgtttaattataagtggac |
50 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23408224 |
agatatctgctatatgtttaattataagtggac |
23408192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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