View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3641_low_7 (Length: 270)

Name: NF3641_low_7
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3641_low_7
NF3641_low_7
[»] chr7 (7 HSPs)
chr7 (140-270)||(23026179-23026309)
chr7 (140-270)||(23034987-23035117)
chr7 (1-74)||(23026375-23026448)
chr7 (1-56)||(23035197-23035252)
chr7 (149-232)||(23091379-23091462)
chr7 (144-199)||(23056655-23056710)
chr7 (149-232)||(23063829-23063912)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 23026309 - 23026179
Alignment:
Q  140 aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcacatactgat 239  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23026309 aatggatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaatagtatatcacatactgat 23026210  T
Q  240 cctgttacattaaaccctttgcttctccact 270  Q
    ||||||||||||||||||||| || ||||||    
T  23026209 cctgttacattaaaccctttgtttttccact 23026179  T

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Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 23035117 - 23034987
Alignment:
Q  140 aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcacatactgat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  23035117 aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattaatcttttgcgttgttcatgaaataatatatcacatactgat 23035018  T
Q  240 cctgttacattaaaccctttgcttctccact 270  Q
    ||||||||||||||||||||| || ||||||    
T  23035017 cctgttacattaaaccctttgtttttccact 23034987  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23026448 - 23026375
Alignment:
Q  1 ctattattttcttactggtaggttttgcagcattgtttacctaaaaggtaacattaattacattatattttgtc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  23026448 ctattattttcttactggtaggttttgcagcattgtttacctaaaaggtaacattatatacattatattttgtc 23026375  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23035252 - 23035197
Alignment:
Q  1 ctattattttcttactggtaggttttgcagcattgtttacctaaaaggtaacatta 56  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23035252 ctattattttcttacttgtaggttttgcagcattgtttacctaaaaggtaacatta 23035197  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 23091462 - 23091379
Alignment:
Q  149 tactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcaca 232  Q
    ||||||||||||||| ||||| |||||| | |||| |||||||||||| | ||| |  ||||||||| ||||||||| ||||||    
T  23091462 tactagaatattgagttttccttgaaaggttgaagcaacagtttccatcaatttttcacgttgttcacgaaataataaatcaca 23091379  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 23056710 - 23056655
Alignment:
Q  144 gatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattag 199  Q
    |||| ||||||||||||||| ||||| |||||||| |||| |||| ||||||||||    
T  23056710 gatcttactagaatattgagttttccttgaaagattgaagcaacattttccattag 23056655  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 23063912 - 23063829
Alignment:
Q  149 tactagaatattgagctttccatgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaataatatatcaca 232  Q
    ||||||||||||||| ||||||| |||||| |||| ||| |||||||| |  || |  ||||| ||||||||||||| ||||||    
T  23063912 tactagaatattgagttttccatcaaagatcgaagcaacggtttccatcaacttttgacgttggtcatgaaataataaatcaca 23063829  T

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