View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3641_low_9 (Length: 249)
Name: NF3641_low_9
Description: NF3641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3641_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12312258 - 12312022
Alignment:
| Q |
1 |
taagcccttcaccagttacaagacaacaactttgaagcctaatactcgaaaggcctcgaaaatttgtagtcatagcaatagcaaatagatgattgttttc |
100 |
Q |
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| T |
12312258 |
taagcccttcaccagttacaagacaacaactttgaagcctaatactcgaaaggcctcgaaaatttgtagtcatagcaatagcaaatagatgattgttttc |
12312159 |
T |
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| Q |
101 |
aaggtccataggtaaacgaaaatcgagtttatgcaaattattagaactacaatttgaaaagaaatgtagcaaaccctctctgctaccaccatcatgaacc |
200 |
Q |
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| T |
12312158 |
aaggtccataggtaaacgaaaatcgagtttatgcaaattattagaactacaatttgaaaagaaatgtagcaaaccctctctgctaccaccatcatgaacc |
12312059 |
T |
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| Q |
201 |
aaaagtgattccaatgagttacaatgttgtgcaaggt |
237 |
Q |
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| T |
12312058 |
aaaagtgattccaatgagttacaatgttgtgcaaggt |
12312022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 12235096 - 12235173
Alignment:
| Q |
70 |
tcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagtttatgcaaattattagaact |
148 |
Q |
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| T |
12235096 |
tcatagccatataaaatagatgatggtattcaaggtccatggataatcgaaaatcaagtttatgc-aattattagaact |
12235173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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