View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3642_low_1 (Length: 527)
Name: NF3642_low_1
Description: NF3642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3642_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 187 - 519
Target Start/End: Original strand, 7258005 - 7258337
Alignment:
| Q |
187 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
286 |
Q |
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| T |
7258005 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
7258104 |
T |
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| Q |
287 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
386 |
Q |
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| T |
7258105 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
7258204 |
T |
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| Q |
387 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
486 |
Q |
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| T |
7258205 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
7258304 |
T |
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| Q |
487 |
ttgcattcttttagtatgataaatctctctgct |
519 |
Q |
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| T |
7258305 |
ttgcattcttttagtatgataaatctctctgct |
7258337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
| Q |
78 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
137 |
Q |
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| T |
7257902 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
7257961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
| Q |
10 |
catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa |
72 |
Q |
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| T |
7257800 |
catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa |
7257862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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