View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3642_low_2 (Length: 427)
Name: NF3642_low_2
Description: NF3642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3642_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 38423311 - 38422903
Alignment:
| Q |
19 |
caaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttctttttctctatcccattnnnnnn |
118 |
Q |
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| T |
38423311 |
caaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttctttttctctatcccattaaaaaa |
38423212 |
T |
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| Q |
119 |
nccttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattat |
218 |
Q |
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| T |
38423211 |
accttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaacacaaagcaaagttgattat |
38423112 |
T |
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| Q |
219 |
ttgagtaattaatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagttttt |
318 |
Q |
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| T |
38423111 |
ttgagtaattaatcaaaggaaaaaacgtaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagttttt |
38423012 |
T |
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| Q |
319 |
gtggaaatcatcatcattcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgtt |
418 |
Q |
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| T |
38423011 |
gtggaaatcatcatcattcaagtggaacacacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgtt |
38422912 |
T |
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| Q |
419 |
cttgttctc |
427 |
Q |
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| T |
38422911 |
cttgttctc |
38422903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 228 - 427
Target Start/End: Complemental strand, 38413218 - 38413016
Alignment:
| Q |
228 |
taatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
327 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38413218 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
38413119 |
T |
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| Q |
328 |
atcatca---ttcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
424 |
Q |
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|||||| |||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38413118 |
ttcatcaggattcaggtggaacagacttacttcgccggtttcattcatggaagatattgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
38413019 |
T |
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| Q |
425 |
ctc |
427 |
Q |
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||| |
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| T |
38413018 |
ctc |
38413016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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