View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3643_high_1 (Length: 354)
Name: NF3643_high_1
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 54791430 - 54791085
Alignment:
| Q |
1 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54791430 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaa |
54791331 |
T |
|
| Q |
101 |
tggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791330 |
tggtctgtacttggcaaattcctttagccagtatccagaatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctca |
54791231 |
T |
|
| Q |
201 |
acctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcga |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54791230 |
acctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatactttgccagagcga |
54791131 |
T |
|
| Q |
301 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791130 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
54791085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 54777716 - 54778060
Alignment:
| Q |
1 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaa |
100 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54777716 |
atttctcaaattcacttgcattcttgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaa |
54777815 |
T |
|
| Q |
101 |
tggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
54777816 |
tggtctgtacttggcaaattcctttagccagtatccagaatcgttaaggttgctcttaatgttaacgattatacctgtccatggcca-acataattctca |
54777914 |
T |
|
| Q |
201 |
acctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcga |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54777915 |
acctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatactttgccagagcga |
54778014 |
T |
|
| Q |
301 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778015 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
54778060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 52284088 - 52283743
Alignment:
| Q |
1 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52284088 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaa |
52283989 |
T |
|
| Q |
101 |
tggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
52283988 |
tggtctgtacttggcaaattcctttagccagtatccagaatcattcagtttgctcttaatattaacaattatgcctgtccatggccagacatagttctca |
52283889 |
T |
|
| Q |
201 |
acctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcga |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
52283888 |
acctgtggtgcaggttggttgacagcttcggtcaaaggcgggggaggtatttggtctgcttcatttgctaggtcagtctccaaaaactttgccagagcga |
52283789 |
T |
|
| Q |
301 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52283788 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgct |
52283743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 799358 - 799020
Alignment:
| Q |
1 |
atttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| |
|
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| T |
799358 |
atttctcaagctcacttgcattcataaacccattccagtcattgttgaagtctataacagccacggagttaccatccatcaagaacgtatgaacagccaa |
799259 |
T |
|
| Q |
101 |
tggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctca |
200 |
Q |
| |
|
||| ||||||| |||||||||||| || ||||||||| ||| | | ||||| ||||| || | |||||||||||| ||||| || || |||||| |
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| T |
799258 |
cggtttgtacttagcaaattccttttgcaagtatccagaatcatgtgatttgctt---atgttgacaagtatgcctgtccacggccaaacgtagttctca |
799162 |
T |
|
| Q |
201 |
acctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcga |
300 |
Q |
| |
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|| || |||||||| |||||| | | |||||||||| |||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||| | |
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| T |
799161 |
acttgga---caggttggacaacagctacagtcaaagccgggcgaggtacttggtctgcttcatttgctaagtcagtcctcaaaaactttgccagagcca |
799065 |
T |
|
| Q |
301 |
ggtggtttgccttttgtttggcgtttctgtttgctgaacctttgc |
345 |
Q |
| |
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|||||||||| ||||| || | | |||||||||| |||||||||| |
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| T |
799064 |
ggtggtttgctttttgctttgtgcttctgtttgccgaacctttgc |
799020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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