View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3643_high_7 (Length: 233)
Name: NF3643_high_7
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_high_7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34254489 - 34254257
Alignment:
| Q |
1 |
acaatacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgc |
100 |
Q |
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| T |
34254489 |
acaatacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgc |
34254390 |
T |
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| Q |
101 |
caacaagcattttcctaaattaagagggacaattcgtcctaaaagactagttcattaattttggattcctcactttaaatgcatgacaatttaattaatc |
200 |
Q |
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| T |
34254389 |
caacaagcattttcctaaattaagagggacaattcgtcctaaaagactagttcattaattttggattcctcactttaaatgcatgacaatttaattaatc |
34254290 |
T |
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| Q |
201 |
ttagtcattcgatcctaaatcaaaggtgaagac |
233 |
Q |
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| T |
34254289 |
ttagtcattcgatcctaaatcaaaggtgaagac |
34254257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 3450169 - 3450059
Alignment:
| Q |
5 |
tacacgggggagagagagaaaaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgtgtattcaggcttgtgttggtgtcgtgccaac |
104 |
Q |
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|||| |||||||||||| | ||||||||||||||||||| |||||||||||| ||||| | ||||||| || ||| | |||| |||||||||||||||| |
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| T |
3450169 |
tacatgggggagagaga-ataaaagcaatgctgcacattattcatccaagggttatattagtgtcgtgcgttttcgtgtttgtattggtgtcgtgccaac |
3450071 |
T |
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| Q |
105 |
aagcattttcct |
116 |
Q |
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| T |
3450070 |
aagcaatttcct |
3450059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40891730 - 40891831
Alignment:
| Q |
1 |
acaatacacgggggagagagagaa-aaaagcaatgctgcacatttttcatccaagggctatatcattgtcgtgtgtattcaggcttgtgttggtgtcgtg |
99 |
Q |
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|||||||| ||||| | ||||||| |||||||||| |||||||| |||||||||||| ||||| ||||||| || ||| |||||| ||| ||||||| |
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| T |
40891730 |
acaatacatggggggg-gagagaataaaagcaatgttgcacattcttcatccaagggttatattggtgtcgtgcgttttcgtgcttgtattgttgtcgtg |
40891828 |
T |
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| Q |
100 |
cca |
102 |
Q |
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||| |
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| T |
40891829 |
cca |
40891831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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