View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3643_low_1 (Length: 376)

Name: NF3643_low_1
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3643_low_1
NF3643_low_1
[»] chr3 (5 HSPs)
chr3 (1-363)||(26304163-26304525)
chr3 (204-360)||(49961030-49961186)
chr3 (204-360)||(409338-409494)
chr3 (204-360)||(414448-414604)
chr3 (1-65)||(43679405-43679470)
[»] chr6 (3 HSPs)
chr6 (91-360)||(8533368-8533637)
chr6 (204-360)||(20788090-20788246)
chr6 (204-349)||(24185823-24185968)
[»] chr7 (1 HSPs)
chr7 (165-360)||(35050000-35050195)
[»] chr1 (8 HSPs)
chr1 (244-360)||(49245400-49245516)
chr1 (165-360)||(41699631-41699826)
chr1 (165-360)||(41705225-41705420)
chr1 (180-360)||(40249785-40249965)
chr1 (204-349)||(24343936-24344081)
chr1 (204-349)||(24356314-24356459)
chr1 (7-77)||(25672686-25672757)
chr1 (7-65)||(25677533-25677592)
[»] chr5 (2 HSPs)
chr5 (165-360)||(23557914-23558109)
chr5 (153-256)||(14663384-14663487)
[»] chr4 (1 HSPs)
chr4 (165-360)||(54077124-54077319)
[»] chr2 (3 HSPs)
chr2 (204-360)||(15048641-15048797)
chr2 (1-77)||(25199863-25199940)
chr2 (7-65)||(43009776-43009835)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-360)||(44203-44384)
[»] chr8 (1 HSPs)
chr8 (1-65)||(15091984-15092049)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 26304525 - 26304163
Alignment:
Q  1 caaatgtatcagagcagtttgctttctcaaaagacaattcttctgaccaaataacttcctaataaactccaacataatataattctttgaatactttctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26304525 caaatgtatcagagcagtttgctttctcaaaagacaattcttctgaccaaataacttcctaataaattccaacataatataattctttgaatactttctc 26304426  T
Q  101 actttcaatcacagaaaatatagaatttaaaccctctgaatctttaaatgaagtattgcaatagatcatagaggcaacttctacttgaaattctttgaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304425 actttcaatcacagaaaatatagaatttaaaccctctgaatcttaaaatgaagtattgcaatagatcatagaggcaacttctacttgaaattctttgaat 26304326  T
Q  201 atggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcct 300  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304325 tttgcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcct 26304226  T
Q  301 tttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtctgtg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304225 tttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtctgtg 26304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 49961186 - 49961030
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    ||||||||||||  ||||||||||||  ||||||||||||| ||||| | ||||| ||| |||  |||||| |||| ||| ||||| ||| |||||||||    
T  49961186 gcattggtaaatgctttttggaattggaactcaaagccaaagtgactaatacaagaaataactgtattaaaagaacgaaagtcagcaatgttttcctttt 49961087  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    |||||||||||||||||||| | |||||||| | |||| |||||||||||| |||||    
T  49961086 caatcttatctttcaatgcattatcatattgctcaacagattgcttcaatgttgtct 49961030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 409338 - 409494
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    |||||||||||   ||||||||||||  | ||||||||||| ||||| | ||||||||| ||   |||||| |||| ||| || || ||| |||||||||    
T  409338 gcattggtaaaggctttttggaattggaattcaaagccaaagtgactaatacaagcaataaccgtattaaaagaacgaaagtcggcaatgttttcctttt 409437  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    |||| ||||||||||||||| | ||||| || | |||||||||||||| || |||||    
T  409438 caattttatctttcaatgcattatcatactgctcaacaaattgcttcagtgttgtct 409494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 414604 - 414448
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    |||||||||||   ||||||||||||  | ||||||||||| ||||| | ||||||||| ||   |||||| |||| ||| || || ||| |||||||||    
T  414604 gcattggtaaaggctttttggaattggaattcaaagccaaagtgactaatacaagcaataaccgtattaaaagaacgaaagtcggcaatgttttcctttt 414505  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    |||| ||||||||||||||| | ||||| || | |||||||||||||| || |||||    
T  414504 caattttatctttcaatgcattatcatactgctcaacaaattgcttcagtgttgtct 414448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43679470 - 43679405
Alignment:
Q  1 caaatgtatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataa 65  Q
    |||||||||||||| |||||||| ||||| |||| || |||||||| |||| ||||||| ||||||    
T  43679470 caaatgtatcagagtagtttgctctctcagaagataacttcttctggccaagtaacttcttaataa 43679405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 91 - 360
Target Start/End: Original strand, 8533368 - 8533637
Alignment:
Q  91 atactttctcactttcaatcacagaaaatatagaatttaaaccctctgaatctttaaatgaagtattgcaatagatcatagaggcaacttctacttgaaa 190  Q
    ||||||||| |||||| |||||| |||||||||||||  ||||| |  | |||| ||||||||||| |||||| |||||||| | |||||||||||||||    
T  8533368 atactttcttactttctatcacataaaatatagaattataacccaccaattcttcaaatgaagtatggcaatacatcatagaagaaacttctacttgaaa 8533467  T
Q  191 ttctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagcc 290  Q
    |||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8533468 ttctttgaattttgcattggtaaatgatttttggaattgtgattcaaagccaaaatgacttacacaagcaattactgaattaaatgaaccaaaatcagcc 8533567  T
Q  291 atgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8533568 ttgctttccttttcaatcttatctttcaatgcactgtcatattgttcaacaaattgcttcaatgatgtct 8533637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 20788090 - 20788246
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    ||||||||||||  ||||||||||||  ||||||| ||||| ||||| | ||||  ||| |||  |||||| |||| ||| ||||| ||  |||||||||    
T  20788090 gcattggtaaatgctttttggaattggaactcaaaaccaaagtgactaatacaaaaaataactgtattaaaagaacgaaagtcagcaattttttcctttt 20788189  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    |||| || |||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  20788190 caattttgtctttcaatgcattatcatatttctcaacaaattgcttcaatgttgtct 20788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 349
Target Start/End: Original strand, 24185823 - 24185968
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    |||||||||||   ||||||||||||  | ||||||||||| ||||| | ||||||||| ||   |||||| |||| ||| || || ||| |||||||||    
T  24185823 gcattggtaaaggctttttggaattggaattcaaagccaaagtgactaatacaagcaataaccgtattaaacgaacgaaagtcggcaatgttttcctttt 24185922  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgctt 349  Q
    |||| ||||||||||||||| | ||||| || | ||||||||||||    
T  24185923 caattttatctttcaatgcattatcatactgctcaacaaattgctt 24185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 35050195 - 35050000
Alignment:
Q  165 atcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaatta 264  Q
    |||||||| |||| ||| | |||||||||||||||| | ||||||||||||  |||||||||||| ||||||||||||||| |||| | ||||||||||     
T  35050195 atcatagaagcaatttcaatttgaaattctttgaattttgcattggtaaatgctttttggaattgagactcaaagccaaaaagactaatacaagcaattg 35050096  T
Q  265 ctaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     |  |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||| |||||    
T  35050095 ttgtattaaatgaaacaaaatcagccatgctttccttttcaattttatctttcaacgcattgtcatattgttcaacaaattgcttcaatgttgtct 35050000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 244 - 360
Target Start/End: Complemental strand, 49245516 - 49245400
Alignment:
Q  244 aatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaa 343  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49245516 aatgacttacacaagcaattactgaattaaatgaaccaaaatcatccctgctttccttttcaatcttatctttcaatgcactgtcatattgttcaacaaa 49245417  T
Q  344 ttgcttcaatgatgtct 360  Q
    |||||||||||||||||    
T  49245416 ttgcttcaatgatgtct 49245400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 41699826 - 41699631
Alignment:
Q  165 atcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaatta 264  Q
    |||||||| || |||||||||||||| ||||||||| | || |||||| ||   ||||| ||||| || ||||| ||||||||||||| ||||||||| |    
T  41699826 atcatagaagccacttctacttgaaactctttgaattttgcgttggtatatgccttttgaaattgagattcaaatccaaaatgacttatacaagcaataa 41699727  T
Q  265 ctaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     |  ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  41699726 ttctattgaatgaactaaaatcagccatattttccttttcaattttatctttcaatgcattatcatattgttcaacaaattgcttcaatgatgtct 41699631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 41705420 - 41705225
Alignment:
Q  165 atcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaatta 264  Q
    |||||||| || |||||||||||||| ||||||||| | || |||||| ||   ||||| ||||| || ||||| ||||||||||||| ||||||||| |    
T  41705420 atcatagaagccacttctacttgaaactctttgaattttgcgttggtatatgccttttgaaattgagattcaaatccaaaatgacttatacaagcaataa 41705321  T
Q  265 ctaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     |  ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  41705320 ttctattgaatgaactaaaatcagccatattttccttttcaattttatctttcaatgcattatcatattgttcaacaaattgcttcaatgatgtct 41705225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 360
Target Start/End: Complemental strand, 40249965 - 40249785
Alignment:
Q  180 tctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgact-caaagccaaaatgacttacacaagcaattactaaattaaatgaa 278  Q
    ||||||||||||||||||||| ||||| ||||||||  ||| ||||| || |||| |||||||||||||||| ||||||||||||  | | |||||||||    
T  40249965 tctacttgaaattctttgaatttggcaatggtaaatgctttctggaaatg-gacttcaaagccaaaatgactcacacaagcaattgttgagttaaatgaa 40249867  T
Q  279 ccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     ||||||||||||||||||||||||| || ||||| |||||||||  |||||| |||| ||||||| ||||||||| |||||    
T  40249866 tcaaaatcagccatgctttccttttcgattttatcattcaatgcatcgtcatactgttcaacaaatcgcttcaatgttgtct 40249785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 349
Target Start/End: Complemental strand, 24344081 - 24343936
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    |||||||||||   ||||||||||||  ||||||||||||| ||||| | ||||||||| ||   |||||| |||| ||| || || ||| |||||||||    
T  24344081 gcattggtaaaggctttttggaattggaactcaaagccaaagtgactaatacaagcaataaccgtattaaaagaacgaaagtcggcaatgttttcctttt 24343982  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgctt 349  Q
    |||| ||||||||||||||| | ||||| || | ||||||||||||    
T  24343981 caattttatctttcaatgcattatcatactgctcaacaaattgctt 24343936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 349
Target Start/End: Complemental strand, 24356459 - 24356314
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    |||||||||||   ||||||||||||  | ||||||||||| ||||| | ||||||||| ||   |||||| |||| ||| || || ||| |||||||||    
T  24356459 gcattggtaaaggctttttggaattggaattcaaagccaaagtgactaatacaagcaataaccgtattaaaagaacgaaagtcggcaatgttttcctttt 24356360  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgctt 349  Q
    |||| ||||||||||||||| | ||||| || | ||||||||||||    
T  24356359 caattttatctttcaatgcattatcatactgctcaacaaattgctt 24356314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 25672686 - 25672757
Alignment:
Q  7 tatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataaactccaacataa 77  Q
    ||||||||||||||||| ||||| |||| || |||||||| |||| ||||||||||||||  ||||||||||    
T  25672686 tatcagagcagtttgctctctcagaagataacttcttctggccaagtaacttcctaataacttccaacataa 25672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 25677533 - 25677592
Alignment:
Q  7 tatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataa 65  Q
    ||||||||||||||||| ||||| |||| || |||||||| |||| ||||||||||||||    
T  25677533 tatcagagcagtttgctctctcagaagataacttcttctggccaagtaacttcctaataa 25677592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 360
Target Start/End: Complemental strand, 23558109 - 23557914
Alignment:
Q  165 atcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaatta 264  Q
    |||||||| || |||||||||||||| ||||||||| | || |||||| ||   ||||| ||||| || ||||| ||||||||||||| ||||||||| |    
T  23558109 atcatagaagccacttctacttgaaactctttgaattttgcgttggtatatgccttttgaaattgagattcaaatccaaaatgacttatacaagcaataa 23558010  T
Q  265 ctaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     |  ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  23558009 ttctattgaatgaactaaaatcagccatattttccttttcaattttatctttcaatgcattatcatattgttcaacaaattgcttcaatgatgtct 23557914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 14663384 - 14663487
Alignment:
Q  153 gtattgcaatagatcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgactta 252  Q
    ||||| ||||| ||||||||  ||| ||||| ||| |  ||||||||  | ||||||||||||   ||||||||||| ||||||||||||||  ||||||    
T  14663384 gtattacaatacatcatagaaacaatttctaattggagctctttgaactttgcattggtaaatgccttttggaattgagactcaaagccaaagagactta 14663483  T
Q  253 caca 256  Q
    ||||    
T  14663484 caca 14663487  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 360
Target Start/End: Original strand, 54077124 - 54077319
Alignment:
Q  165 atcatagaggcaacttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaatta 264  Q
    |||||||| || |||||||||||||| ||||||||| | || |||||| ||   ||||| ||||| || ||||| ||||||||||||| ||||||||| |    
T  54077124 atcatagaagccacttctacttgaaactctttgaattttgcgttggtatatgccttttgaaattgagattcaaatccaaaatgacttatacaagcaataa 54077223  T
Q  265 ctaaattaaatgaaccaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
     |  ||| ||||||| ||||||||||||  ||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  54077224 ttctattgaatgaactaaaatcagccatattttccttttcaattttatctttcaatgcattatcatattgttcaacaaattgcttcaatgatgtct 54077319  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 15048641 - 15048797
Alignment:
Q  204 gcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatgaaccaaaatcagccatgctttcctttt 303  Q
    ||||||||||||  ||||||||||||  ||||||||||||| ||||| | ||||| ||| |||  |||||| |||| ||| ||||| ||| |||||||||    
T  15048641 gcattggtaaatgctttttggaattggaactcaaagccaaagtgactaatacaagaaataactgtattaaaagaacgaaagtcagcaatgttttcctttt 15048740  T
Q  304 caatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    |||| || |||||||||||| | |||||||| | ||||||||||||||||| |||||    
T  15048741 caattttgtctttcaatgcattatcatattgctcaacaaattgcttcaatgttgtct 15048797  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25199863 - 25199940
Alignment:
Q  1 caaatgtatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataaactccaacataa 77  Q
    ||||||||||||||||||||||| ||||| |||| || |||||||  |||| ||||||||||||||  ||||||||||    
T  25199863 caaatgtatcagagcagtttgctctctcagaagataacttcttctagccaagtaacttcctaataacttccaacataa 25199940  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 43009835 - 43009776
Alignment:
Q  7 tatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataa 65  Q
    ||||||||||||||||| ||||| |||| || |||||||| |||| ||||||||||||||    
T  43009835 tatcagagcagtttgctctctcagaagataacttcttctggccaagtaacttcctaataa 43009776  T

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Target: scaffold0045 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 178 - 360
Target Start/End: Complemental strand, 44384 - 44203
Alignment:
Q  178 cttctacttgaaattctttgaatatggcattggtaaataatttttggaattgtgactcaaagccaaaatgacttacacaagcaattactaaattaaatga 277  Q
    ||||||||||||| ||||||||| | ||||||||| ||   ||||| ||||| || ||||| ||||||||||||| ||||||||| | || ||| |||||    
T  44384 cttctacttgaaactctttgaattttgcattggtatatgccttttgaaattgagattcaaatccaaaatgacttatacaagcaataattatattgaatga 44285  T
Q  278 accaaaatcagccatgctttccttttcaatcttatctttcaatgcactgtcatattgtttaacaaattgcttcaatgatgtct 360  Q
    || ||||| |||| |  |||||||||| || ||||||||||||||| |  ||||||||| ||||||||| |||| || |||||    
T  44284 actaaaatgagccctattttccttttc-attttatctttcaatgcattaccatattgttcaacaaattgtttcattgttgtct 44203  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15091984 - 15092049
Alignment:
Q  1 caaatgtatcagagcagtttgctttctcaaaagacaa-ttcttctgaccaaataacttcctaataa 65  Q
    ||||||||||||||||||||||| ||||| |||| || |||||||| |||| ||||||||||||||    
T  15091984 caaatgtatcagagcagtttgctctctcagaagataacttcttctggccaagtaacttcctaataa 15092049  T

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