View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3643_low_3 (Length: 311)
Name: NF3643_low_3
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 47444443 - 47444266
Alignment:
| Q |
18 |
cctgtccttttcttctcactctctcccactatttattcacaagattgcaaactcctattcatggttacccaccttctcttctcaacctccttctagagtc |
117 |
Q |
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| T |
47444443 |
cctgtccttttcttctcactctctctcactatttattcacaagattgcaaactcctattcatggttacccaccttctcttctcaacctccttctagagtc |
47444344 |
T |
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| Q |
118 |
aaacccttcctcatccttcttccacctcctactttcactttcataccccccactaatcaaaatctcactttcacacac |
195 |
Q |
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| T |
47444343 |
aaacccttcctcatccttcttccacctcctactttcactttcataccccccactaatcaaaatctcactttcacacac |
47444266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 47444224 - 47444175
Alignment:
| Q |
247 |
ttacctttacatgtttcaacatgaatttcaaaacctgcaggtattatact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47444224 |
ttacctttacatgtttcaacatgaatttcaaaacctgcaggtattatact |
47444175 |
T |
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