View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3643_low_4 (Length: 256)
Name: NF3643_low_4
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_low_4 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 43486873 - 43486650
Alignment:
| Q |
14 |
agacaaaaagagaaaatttacggtgtttggatacaatttcttaatctcatatactaagccacttgggttgacttagtggtattagtttgaaacttgggag |
113 |
Q |
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| T |
43486873 |
agacaacaagagaaaatttagggtgtttggatacaatttcttaatctcatatactaagccacttaggttggcttagtggtattaatttaaaacttgggag |
43486774 |
T |
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| Q |
114 |
tgtgttcattcttaaggtatctgatttgattatctccgttgtcaatttgagcggactaaatttgggtaaatataatgaacaagcattagtatataagaag |
213 |
Q |
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| T |
43486773 |
tatgttcattcttaagatatcagatttgattatctctgttgtcaatttgggtggactaaatttgagtaaatataatgaacaagcattagtatataagaag |
43486674 |
T |
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| Q |
214 |
tatagagctctaccatgatcacac |
237 |
Q |
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| T |
43486673 |
tatagagctctaccatgatcacac |
43486650 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 24438316 - 24438229
Alignment:
| Q |
76 |
ttgggttgacttagtggtattagtttgaaacttgggagtgtgttcattcttaaggtatctgatttgattatctccgttgtcaatttga |
163 |
Q |
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| T |
24438316 |
ttgggttgacttagtggtattggtttgggacttgggagtgtgctctttcttaaggtttcagattcgattctctctggtgtcaatttga |
24438229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 34293889 - 34293844
Alignment:
| Q |
72 |
ccacttgggttgacttagtggtattagtttgaaacttgggagtgtg |
117 |
Q |
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| T |
34293889 |
ccacttgggttgacctagtggtattggtttggaatttgggagtgtg |
34293844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 27989729 - 27989653
Alignment:
| Q |
73 |
cacttgggttgacttagtggtattagtttgaaacttgggagtgtgttcattcttaaggtatctgatttgattatctc |
149 |
Q |
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| T |
27989729 |
cacttggattggcctagtggtattagcttggaacttgggagtatgctccttcttaaggtttcaggttcgattatctc |
27989653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 25405 - 25329
Alignment:
| Q |
87 |
tagtggtattagtttgaaacttgggagtgtgttcattcttaaggtatctgatttgattatctccgttgtcaatttga |
163 |
Q |
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| T |
25405 |
tagtggtattggcttgagacttgggagtgtgctccttctcaaggtctcaggttcgattatctctggtgtcaatttga |
25329 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 25627060 - 25627152
Alignment:
| Q |
72 |
ccacttgggttgacttagtggtattagtttgaaacttgggagtgtgttcattcttaaggtatctgatttgattatctccgttgtcaatttgag |
164 |
Q |
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| T |
25627060 |
ccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttgag |
25627152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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