View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3643_low_5 (Length: 253)
Name: NF3643_low_5
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 54791082 - 54790844
Alignment:
| Q |
1 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791082 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
54790983 |
T |
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| Q |
101 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54790982 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattgaa |
54790883 |
T |
|
| Q |
201 |
gctctgcatacaattacaaatgtcagttcataagtataa |
239 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |
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| T |
54790882 |
gctctgcatacagttacgaatgtcagttcataagtataa |
54790844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 54778063 - 54778301
Alignment:
| Q |
1 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778063 |
ctccggtttcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
54778162 |
T |
|
| Q |
101 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54778163 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatctgactcttcttcagagctgtagtccattgaa |
54778262 |
T |
|
| Q |
201 |
gctctgcatacaattacaaatgtcagttcataagtataa |
239 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||| |
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| T |
54778263 |
gctctgcatacagttacgaatgtcagttcataagtataa |
54778301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 52283740 - 52283502
Alignment:
| Q |
1 |
ctccggttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcacttt |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
52283740 |
ctccagttgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatggacacctgagtgtaccgtttaaattcttcacttt |
52283641 |
T |
|
| Q |
101 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
52283640 |
gtatttaccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcgctgatatctgactcttcttcagagctgtagtccattgaa |
52283541 |
T |
|
| Q |
201 |
gctctgcatacaattacaaatgtcagttcataagtataa |
239 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
52283540 |
gctctgcatacaattacaaatgtcagttcgtaagtataa |
52283502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 799009 - 798789
Alignment:
| Q |
8 |
tgcatgttgcatcaaatccttatatttgaactcttgcttcttttttccagcacaatatgggcacctgagtgtgccgtttaagttcttcactttgtattta |
107 |
Q |
| |
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||||||||||| || ||||||||| ||||| |||||||| || ||||||| ||||| |||||||| || || || || |||||| |||||||||||| |
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| T |
799009 |
tgcatgttgcaacagatccttatacttgaattcttgctttttctttccagagcaatacgggcacctaagagtcccattgttgttcttgactttgtattta |
798910 |
T |
|
| Q |
108 |
ccatcctttaactccttataaggtttgtcagagtattcctcaatctcagactcactgatatccgactcttcttcagagctgtagtccattgaagctctgc |
207 |
Q |
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|| || ||||||| | ||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |
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| T |
798909 |
ccggcccttaactcttcatatggtttctcagagtattcctcgatctcagactcactgatctctgactcttcttcagagctgtagtccattgaaactctgc |
798810 |
T |
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| Q |
208 |
atacaattacaaatgtcagtt |
228 |
Q |
| |
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|| ||| |||||||||||| |
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| T |
798809 |
gtaagatttcaaatgtcagtt |
798789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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