View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3643_low_6 (Length: 250)
Name: NF3643_low_6
Description: NF3643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3643_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42548178 - 42548417
Alignment:
| Q |
1 |
cttgtatccaatcctcaaccaccttgcaaaagttaagcttctttgtacaattaacaataacattattttcctcaatgctttgttcgatgtaatcgaacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42548178 |
cttgtatccaatcctcaaccaccttgcaaaagttaagcttctttgaacaattaacattaacattattttcctcaatgctttgttcgatgtaatcgaacag |
42548277 |
T |
|
| Q |
101 |
taggttctccgcgttaatcatcaaatcattggatggaactgaccttttcacaaaattgaaaagatcatgtgcatcttcctcattgttgtttccaataact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42548278 |
taggttctccgcgttaatcatcaaatcattggatggaactgaccttttcacaaaattgaaaagatcatgtgcatcttcctcattgttgtttccaataact |
42548377 |
T |
|
| Q |
201 |
ggtgcaaattctgaacattgttttgtagaatggttctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42548378 |
ggtgcaaattctgaacattgttttgtagaatggttctgtg |
42548417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University