View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_high_1 (Length: 600)
Name: NF3644_high_1
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 26423028 - 26422452
Alignment:
| Q |
18 |
gacttttttattttccatatatcttgtaaaaggaaaccatcgttgccttacatgtgcttatctgtttgtcaaataaaagttagagagaaaaattaaatct |
117 |
Q |
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| T |
26423028 |
gacttttttattttccatatatcttgtaaaaggaaaccatcgttgccttacatgtgcttatctgtttgtcaaataaaagttagagagaaaaattaaattt |
26422929 |
T |
|
| Q |
118 |
tgcaagaaagtattaacagtatcatcatcacgtttccttcnnnnnnnnnnnnnngtatcatcgtcacgtt-----tagtgcaaatgattaacatgttaaa |
212 |
Q |
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| T |
26422928 |
tgcaagaaagtattaacagtatcatcatcacgtttccttcaaaaaaaaaaa---gtatcatcgtcacgttgagattagtgcaaataattaacatgttaaa |
26422832 |
T |
|
| Q |
213 |
ataaaatgatatatttagaactaacaaa-ttaattttcaacttacataagaatttctatttacagtaacacttagaccagaaacacttgggaactgtaag |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422831 |
ataaaatgatatatttagaactaacaaaattaattttcaacttacgtaagaatttctatttacagtaacacttagaccagaaacacttgggaactgtaag |
26422732 |
T |
|
| Q |
312 |
tttttcacaaaaataagatggacaatcagagtcttgacgacattcaaacctacgtatgcctcccattacaactaaaagtagtgaaagaaataggatggca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26422731 |
tttttcacaaaaataagatggacaatcagagtcttgacgacattcaaacctacgtatgcctcccattacaactaaaagcagtgaaagaaataggatggca |
26422632 |
T |
|
| Q |
412 |
acatatacaaacttaagacatgtagtcatgtttatataatttgcttgtaatataaatggaaatttgtgtgctcattttatatgtgaaacattaatgcttt |
511 |
Q |
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| T |
26422631 |
acatatacaaacttaagacttgtagtcatgtttatataatttgtttgtaatataaatggaaatttgtgtgctcattttatatgtaaaacattaatgcttt |
26422532 |
T |
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| Q |
512 |
ttctatgtccatctaaatccttttaaaattagaaaataaatatcccttaattatatccatgtgtcatatttgtcctttgct |
592 |
Q |
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| T |
26422531 |
ttctatgtccatctaaatccttct-aaattagaaaataaatatcgcttaattatatccatgtgtcatatttgtcctttgct |
26422452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 194 - 587
Target Start/End: Complemental strand, 26447847 - 26447451
Alignment:
| Q |
194 |
aaatgattaacatgttaaaataaaatgatatatttagaactaacaaa-ttaattttcaacttacataagaatttct---atttacagtaacacttagacc |
289 |
Q |
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|||| ||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||||||||| ||||||| ||||| |||| |
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| T |
26447847 |
aaataattaacacgttaaaataaaatgatacatttagaagtaacaaaattatttttcaacttacctaagaatttcttctatttacacaaacacgtagaat |
26447748 |
T |
|
| Q |
290 |
agaaacacttgggaactgtaagtttttcacaaaaataagatggacaatcagagtcttgacgacattcaaacctacgtatgcctcccattacaactaaaag |
389 |
Q |
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| T |
26447747 |
ggatgcatttcgcaattgtaagtttttcacaaaaataagatggacaatcagagtcttgacgacattccttcttacgtatgcctcccattacaactaaaag |
26447648 |
T |
|
| Q |
390 |
tagtgaaagaaataggatggcaacatatacaaacttaagacatgtagtcatgtttatataatttgcttgtaatataaatggaaatttgtgtgctcatttt |
489 |
Q |
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| T |
26447647 |
tagtgaaagaaataggatggcaacatatacaaacttgagacttgtagtcatattttcctaatttgtttgta----aaatgtaaaagtgtgtgctcatttt |
26447552 |
T |
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| Q |
490 |
atatgtgaaacattaatgctttttctatgtccatctaaatccttttaaaattagaaaat---aaatatcccttaattatatccatgtgtcatatttgtcc |
586 |
Q |
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||||| ||||||||||||||| | |||||||||||||||| |||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |
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| T |
26447551 |
atatgcaaaacattaatgctttgtttatgtccatctaaatctttttaaaattagaatatataaaatatctcttaattatattcatgtgtcatatttgtcc |
26447452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 425
Target Start/End: Original strand, 25004730 - 25004912
Alignment:
| Q |
243 |
aattttcaacttacataagaatttctatttacagtaacacttagaccagaaacacttgggaactgtaagtttttcacaaaaataagatggacaatcagag |
342 |
Q |
| |
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||||| |||||||| || |||||||||||||| |||||||| || || |||||| ||||||||| | || ||||||||||| ||||||||||||| |
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| T |
25004730 |
aatttgcaacttacctagaaatttctatttacataaacacttaaacttgatacacttcggaactgtaggcttaatacaaaaataaggtggacaatcagag |
25004829 |
T |
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| Q |
343 |
tcttgacgacattcaaacctacgtatgcctcccattacaactaaaagtagtgaaagaaataggatggcaacatatacaaactt |
425 |
Q |
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| || || ||||| | |||||| | ||||| ||||||| | ||||||||||| ||||||||| | || |||||||||||| |
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| T |
25004830 |
ttctggcggcattcgggcttacgtacggctcccgttacaacaagaagtagtgaaataaataggatagtaatatatacaaactt |
25004912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 16169473 - 16169517
Alignment:
| Q |
548 |
taaatatcccttaattatatccatgtgtcatatttgtcctttgct |
592 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
16169473 |
taaatgtctcttaattataatcatgtgtcatatttgtcctttgct |
16169517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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